ELIXIR Biodiversity Community

Materials (19)
Events (10)

Showing 19 materials

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ELIXIR TeSS
1

e-learning

Biodiversity data exploration

• Beginner
Ecology Biodiversity Ecology biodiversity data quality taxonomic data
ELIXIR TeSS
2

e-learning

Metabarcoding/eDNA through Obitools

• Beginner
Ecology Biodiversity EBV dataset EBV workflow Ecology biodiversity community composition EBV class eDNA genetic composition EBV class metabarcoding
ELIXIR TeSS
3

e-learning

Species distribution modeling

• Beginner
Ecology Biodiversity Ecology biodiversity gbif interactive-tools modeling species populations EBV class
ELIXIR TeSS
4

lessons

Repositories and Statistics

••• Advanced
FAIR data Bioinformatics Biodiversity Data mining Online Repository Data reuse Data mining Data access management FAIR Data Open Data
ELIXIR TeSS
5

Presentation

Ocellus Factsheet

•• Intermediate
FAIR data Bioinformatics Biodiversity Data mining Data mining Data reuse Online Repository Image Data FAIR Data
ELIXIR TeSS
6

Presentation

BiodiversityPMC Factsheet

•• Intermediate
FAIR data Bioinformatics Biodiversity Data mining Data mining Data reuse FAIR Data Online Repository
ELIXIR TeSS
7

Presentation

SynoSpecies Factsheet

•• Intermediate
FAIR data Bioinformatics Biodiversity Data mining Data mining Data reuse FAIR Data Online Repository Taxonomy Synonimy
ELIXIR TeSS
8

Presentation

SynoSpecies - Explorer for taxonomic name synonymies and augmentations

•• Intermediate
FAIR data Bioinformatics Biodiversity Data mining Data mining Data reuse FAIR Data Online Repository TreatmentBank Taxonomy …
ELIXIR TeSS
9

Presentation

eBioDiv Matching Service factsheet Video

•• Intermediate
FAIR data Bioinformatics Biodiversity Data mining Materials Citation Global Biodiversity Information Facility TreatmentBank Scientific Collections Data reuse
ELIXIR TeSS
10

lessons

eBioDiv Matching Service - User's Tutorial

•• Intermediate
FAIR data Bioinformatics Biodiversity Data mining Materials Citation Global Biodiversity Information Facility TreatmentBank Scientific Collections Data mining Data reuse
ELIXIR TeSS
11

Presentation

eBioDiv Matching Service Factsheet

•• Intermediate
FAIR data Bioinformatics Biodiversity Data mining Materials Citation Global Biodiversity Information Facility TreatmentBank Scientific Collections Data mining Data reuse
ELIXIR TeSS
12

Presentation

Biodiversity Literature Repository Factsheet

•• Intermediate
FAIR data Bioinformatics Biodiversity Data mining BLR Online Repository Zenodo Community Data mining Data reuse FAIR Data
ELIXIR TeSS
13

Presentation

Biodiversity Literature Repository - Presentation

FAIR data Bioinformatics Biodiversity Data mining Online Repository Zenodo Community Data mining Data reuse FAIR Data BLR
ELIXIR TeSS
14

metagenomics/denbi-nanopore-training

Genomics Metagenomics Genome assembly Genomics Long read sequencing Metagenomics Genome assembly
ELIXIR TeSS
15

Training course material for the course "de.NBI Biology meets Programming - Introduction to Bioinformatics using Python"
ELIXIR TeSS
16

e-learning

Cleaning GBIF data using OpenRefine

• Beginner
Ecology Biodiversity Ecology biodiversity data cleaning
ELIXIR TeSS
17

e-learning

Exploring environmental DNA: Metabarcoding workflow and open data resources for eDNA research

Biodiversity Environmental sciences Metabarcoding Metagenomics Microbial ecology Data management Sequencing eDNA Environmental DNA
ELIXIR TeSS
18

e-learning

Cleaning GBIF data for the use in Ecology

• Beginner
Ecology Biodiversity Ecology biodiversity data cleaning data management gbif
ELIXIR TeSS
19

Tutorial, Slides, Scripts

Genome assembly, annotation and comparative genomics - EBP-Nor workshop 2024

Bioinformatics Genomics Comparative genomics Assembly Annotation Comparative genomics

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ELIXIR Biodiversity Community

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Biodiversity data exploration

Metabarcoding/eDNA through Obitools

Species distribution modeling

Repositories and Statistics

Ocellus Factsheet

BiodiversityPMC Factsheet

SynoSpecies Factsheet

SynoSpecies - Explorer for taxonomic name synonymies and augmentations

eBioDiv Matching Service factsheet Video

eBioDiv Matching Service - User's Tutorial

eBioDiv Matching Service Factsheet

Biodiversity Literature Repository Factsheet

Biodiversity Literature Repository - Presentation

metagenomics/denbi-nanopore-training

Training course material for the course "de.NBI Biology meets Programming - Introduction to Bioinformatics using Python"

Cleaning GBIF data using OpenRefine

Exploring environmental DNA: Metabarcoding workflow and open data resources for eDNA research

Cleaning GBIF data for the use in Ecology

Genome assembly, annotation and comparative genomics - EBP-Nor workshop 2024

Learning Pathway Introduction to Galaxy and Ecological data analysis

Learning Pathway Genome annotation for eukaryotes

Learning Pathway Metagenomics data processing and analysis for microbiome

Learning Pathway Genome annotation for prokaryotes

Learning Pathway Introduction to Galaxy and Single Cell RNA Sequence analysis

Learning Pathway From R to Machine Learning; an introductory course

Learning Pathway Introductory SQL

Learning Pathway Introductory Python

Learning Pathway Proteogenomics

Learning Pathway Applying single-cell RNA-seq analysis in Coding Environments

Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions

Metabarcoding and data sharing for environmental DNA

Multiomics Data Analysis and Integration

Single-Cell Transcriptomics with R

NGS - Quality Control, Alignment, Visualisation

NGS - Genome Variant Analysis

Long-read Sequence Analysis

Introduction to bulk RNA-Seq: From Quality Control to Pathway Analysis

Gene Expression made Useful Easily: Tools and Database of Bgee

ISMARA and CREMA: automatically inferring gene regulatory networks from gene expression, chromatin accessibility or epigenome data

UniProt for proteomics scientists

Sequence analysis tools in UniProt: BLAST and Align

UniProt: Focus on Plant Proteins

Genome bioinformatics: from short- to long-read sequencing

Exploring plant genes and genomes with Ensembl

Annotating genomes with non-coding RNAs using Rfam and Infernal

Single cell RNA-seq analysis using Python

Introduction to metabolomics analysis

Proteomics bioinformatics

Data visualisation for biology

Microscopy data analysis: machine learning and the BioImage Archive

R Foundations for Life Scientists

Python programming with applications to bioinformatics

Single Cell RNA-Seq Data Analysis

Introduction To Bioinformatics Using NGS Data

RNA-Seq Data Analysis

Introduction to Biostatistics and Machine Learning

Omics Integration and Systems Biology

Spatial Omics Data Analysis

Data visualization in R

Tools for Reproducible Research

Introduction to Data Management Practices

Integrated Modeling and Optimization (Fundamental)

Analyse van Next Generation Sequencing (NGS) data – Hogeschool Leiden

Algorithms for Genomics – 2025

Algorithms for Genomics

Knowledge graphs in the life sciences

Introduction to Linux command line

Galaxy and Jupyter for RNA-Seq and complex data analyses