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DTSTAMP:20260618T194606Z
UID:db8f5c19-d8bf-42ed-848e-3124eb55011a
DTSTART:20211004T090000Z
DTEND:20211008T170000Z
DESCRIPTION:Educators:\nDr. Dirk Benndorf (Magdeburg\, BiGi)\, Prof. Dr. Al
 exander Goesmann (Giessen\, BiGi)\, Dr. Sebastian Jaenicke (Giessen\, BiGi
 )\, Prof. Dr. Stefan Janssen (JLU Giessen)\, Sebastian Jünemann (Bielefel
 d\, BiGi)\, Dr. Nils Kleinbölting (Bielefeld\, BiGi)\, Kay Schallert (Mag
 deburg\, BiGi)\, Prof. Dr. Alexander Sczyrba (Bielefeld\, BiGi)\, Dr. Dani
 el Wibberg (Bielefeld\, de.NBI Administration office)\, Dr. Georg Zeller (
 Heidelberg\, HD-HuB)\, Dr. Robert Heyer (Magdeburg\, BiGi)\, Jakob Wirbel 
 (Heidelberg\, HD-Hub)\, Dr. Alessio Milanese (ETH Zürich)\n\nDate:\n04. -
  08.10.21\n\nLocation:\nOnline\n\nContent:\nWe are pleased to announce tha
 t the de.NBI Summer School 2021 on Microbial Community Data Analysis will 
 take place from October 4th to 8th\, 2021.\n\nThe German Network for Bioin
 formatics Infrastructure (de.NBI) presents the Summer School on Microbial 
 Community Data Analysis that is organized by the Bielefeld-Gießen (BiGi) 
 Center for Microbial Bioinformatics. The BiGi center is specialized in the
  field of Omics data analysis for microbes and is well-known for its soft
 ware platforms such as EMGB\, MetaProtServ\, or MGX. During the event\, we
  will cover topics such as sequence data preprocessing\, amplicon data ana
 lysis (metabarcoding)\, read- and assembly based metagenomics\, and metapr
 oteomics.\n\nProgram:\n\n*All times refere to Central European Summer Time
  (CEST)! The program includes talks\, lectures and hands-on trainings that
  the participants will conduct on their own computers/laptops.\n\nMonday\,
  04.10.2021\n\n10:00-10:30 Welcome note (A. Goesmann)\n10:30-11:00 Present
 ation of the de.NBI network (D. Wibberg)\n11:00-12:00 Keynote by M. Ziegle
 r\n12:00-13:00 Lunch break\n13:00-14:00 Keynote: Sequencing technologies (
 T. Hain)\n14:00-14:15 Break\n14:15-16:15 From raw data to feature tables (
 S. Janssen\, S. Jaenicke)\n16:15-17:00 Break\n17:00-18:00 Keynote: Advanci
 ng microbiome research through Qiita (A. Gonzalez)\n\nTuesday\, 05.10.2021
 \n\n10:00-12:00 Assessing biodiversity (alpha/beta) (S. Janssen)\n12:00-13
 :00 Lunch break\n13:00-13:30 Statistical testing (S. Janssen)\n13:30-13:45
  Break\n13:45-15:00 Tools for taxonomic classification (S. Jaenicke)\n15:0
 0-16:00 MGX (S. Jaenicke)\n\nWednesday\, 06.10.2021\n\n10:00-12:00 Metagen
 ome assembly (A. Sczyrba\, S. Jünemann\, N. Kleinbölting)\n12:00-13:00 L
 unch break\n13:00-14:00 Binning into MAGs (A. Sczyrba\, S. Jünemann\, N. 
 Kleinbölting)\n14:00-14:45 Annotation &amp\; evaluation of MAGs (A. Sczyr
 ba\, S. Jünemann\, N. Kleinbölting)\n14:45-15:00 Break\n15:00-16:00 Keyn
 ote: Critical assessment of metagenome interpretation - CAMI2 (A. McHardy)
 \n\nThursday\, 07.10.2021\n\n10:00-11:00 Keynote: Shinichi Sunagawa\n11:00
 -11:15 Break\n11:15-13:00 Taxonomic profiling of shotgun metagenomes (Geor
 g Zeller\, Alessio Milanese)\n13:00-14:00 Lunch break\n14:00-14:30 Taxonom
 ic profiling of shotgun metagenomes (Georg Zeller\, Alessio Milanese)\n14:
 30-15:15 Comparative metagenome analysis (Georg Zeller)\n15:15-15:30 Break
 \n15:30-17:00 Comparative metagenome analysis (Jakob Wirbel)\n\nFriday\, 0
 8.10.2021\n\n10:00-11:00 Introduction in analyzing microbial communities b
 y metaproteomics (Dirk Benndorf)\n11:00-12:00 Identification of mass spect
 rometry data using the MetaProteomeAnalyzer (Robert Heyer)\n12:00-13:00 Lu
 nch break\n13:00-14:00 Taxonomic and functional comparison of human gut sa
 mples using the MetaProteomeAnalyzer (Robert Heyer)\n14:00-15:00 Biostatis
 tical data evaluation and data visualization (Robert Heyer)\n15:00-15:15 B
 reak\n15:15-16:00 Keynote: Metaproteomics: where are we now? A community-d
 riven evaluation of experimental and computational techniques (Thilo Muth)
 \n\nKeynote speakers:\n\n    Dr. Maren Ziegler\, Systematics and Biodivers
 ity Lab\, Justus Liebig University Giessen\, Germany\n    PD Dr. Torsten H
 ain\, Medical Microbiology\, Justus Liebig University Giessen\, Germany\n 
    PhD Antonio González Peña\, University of California\, San Diego\, US
 A\n    Prof. Dr. Alice McHardy\, Helmholtz Centre for Infection Research\,
  Braunschweig\, Germany\n    Prof. Dr. Shinichi Sunagawa\, Department of B
 iology\, ETH Zurich\, Switzerland\n    Dr. Thilo Muth\, Bundesanstalt für
  Materialforschung und -prüfung (BAM)\, Berlin\, Germany\n\nPrerequisites
 :\nParticipants need:\n- Basic knowledge in Linux/CLI\n- Basic knowledge o
 f executing programs on the command line (shell)\n- Working knowledge of R
 \n\nRegistration:\nPlease fill out the application form to sign up. The nu
 mber of participants is limited to 20! The application deadline is Septemb
 er 12th.
SUMMARY:2nd de.NBI Summer School 2021 - Microbial Community Analysis 
URL;VALUE=URI:https://www.denbi.de/training/1269-de-nbi-summer-school-2021-
 part-2-microbial-community-analysis
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