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DTSTAMP:20260808T230401Z
UID:4888cd29-3564-401e-bc7f-bed9372c077c
DTSTART:20230720T083000Z
DTEND:20230720T163000Z
DESCRIPTION:Chromatin immunoprecipitation followed by sequencing (ChIP-seq)
  is a method used to identify binding sites for transcription factors\, hi
 stone modifications and other DNA-binding proteins across the genome. In t
 his course\, we will cover the fundamentals of ChIP-seq data analysis\, fr
 om raw data to downstream applications. \n\nWe will start with an introduc
 tion to ChIP-seq methods\, including important considerations when designi
 ng your experiments. We will cover the bioinformatic steps in a standard C
 hIP-seq analysis workflow\, covering raw data quality control\, trimming/f
 iltering\, mapping\, duplicate removal\, post-mapping quality control\, pe
 ak calling and peak annotation. We will discuss metrics used for quality a
 ssessment of the called peaks when multiple replicates are available\, as 
 well as the analysis of differential binding across sample groups. Through
 out the course we will also cover tools and packages that can be used for 
 visualising and exploring your results.\n\n\nIf you do not have a Universi
 ty of Cambridge [Raven account](https://legacy.raven.cam.ac.uk/auth/accoun
 t/) please book or register your interest [here](http://bioinfotraining.bi
 o.cam.ac.uk/booking-form/?event-id=4752638&amp\;course-title=Analysis%20of
 %20ChIP-seq%20data).\n\nAdditional information\n\n* Our courses are only f
 ree for registered University of Cambridge students. All other participant
 s will be charged according to our  [charging policy](http://www.training.
 cam.ac.uk/bioinformatics/info/charging).\n* Attendance will be taken on al
 l courses and a charge is applied for non-attendance\, including for Unive
 rsity of Cambridge students. After you have booked a place\, if you are un
 able to attend any of the live sessions\, please email the [Bioinfo Team](
 https://training.csx.cam.ac.uk/bioinformatics/info/contact).\n* Further de
 tails regarding eligibility criteria are available [here](http://www.train
 ing.cam.ac.uk/bioinformatics/info/eligibility).
LOCATION:Craik-Marshall Building
SUMMARY:Analysis of ChIP-seq data (ONLINE LIVE TRAINING)
URL;VALUE=URI:http://training.csx.cam.ac.uk/bioinformatics/event/4752638
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