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DTSTAMP:20260717T110405Z
UID:354de9fe-8971-487d-921d-f03055786de5
DTSTART:20211021T090000Z
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DESCRIPTION:[COBREXA.jl](https://permedcoe.eu/cobrexa-jl-release/) is a n
 ew software package to enable the analysis and simulation of large metabol
 ic models by taking advantages of modern HPC infrastructure. Mainly\, 
 it advanced the scalability of constraint-based method\, using the Juli
 a programing language and its mathematic ecosystem as a base building bl
 ock. We will talk about the problems that motivated the development of C
 OBREXA.jl and show several of its main applications. We will show the CO
 BREXA.jl interface that allows biologists and bioinformaticians to easily
  specify large amounts of analyses and execute it on supercomputers. Later
 \, we will use COBREXA for creating a model of a small microorganism co
 mmunity\, and demonstrate how the software helps to answer questions abou
 t the viability and chemical activity of microbe ecosystems. \n\n## About
  the speaker\n\nMiroslav Kratochvíl has recently finished his PhD in comp
 uter science at Charles University in Prague\; currently he is a researche
 r focusing on bioinformatics-oriented topics at Luxembourg Centre for Syst
 ems Biomedicine. His research concerns mainly the high-performance algorit
 hms for processing large datasets from life sciences.
LOCATION:\, 
SUMMARY:Analysis of huge metabolic models with COBREXA.jl
URL;VALUE=URI:https://www.ebi.ac.uk/training/events/analysis-huge-metabolic
 -models-cobrexajl
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