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DTSTAMP:20260720T131316Z
UID:2208b7f4-07b6-4403-880a-bd51435c5123
DTSTART:20250505T090000Z
DTEND:20250507T170000Z
DESCRIPTION:This training session is organized by the Genotoul bioinfo plat
 form. This course is dedicated to the analysis of prokaryotic shotgun meta
 genomic data from Illumina and Pacbio HiFi sequencing technology. \n\nAfte
 r an overview of metagenomics and the biases and limitations of analyses\,
  we will look at the main steps involved in analysing metagenomic data and
  launch independent tools on the genobioinfo cluster.\nLearners will then 
 test a workflow to automate processing on a test dataset (metagWGS ).\nOn 
 the third day\, learners will choose which analysis strategy to start with
  according to their experimental design and launch the first stage of meta
 gWGS on their own data.\nBy the end of the course\, trainees will be famil
 iar with the scope\, advantages and limitations of shotgun sequencing data
  analysis and will have started the analysis on their own data.\n\ncalenda
 r\n \n\nThis training is focused on practice. It consists of several modul
 es with a large variety of exercises:\n\nFirst Day\nStart at 09:00 am\nTou
 r de table\nIntroduction to metagenomics\, Illumina and Pacbio data\, anal
 ysis stages\, analysis limits\, etc.\nPresentation of some key tools for e
 ach stage\nPractical work on the main stages launched independently\nEnd a
 t 17:00 pm\nSecond Day\nStart at 09:00 am\nIntroduction to the advantages 
 and disadvantages of workflows and containers\nLaunch of the data cleansin
 g stage\nLaunch of the rest of the workflow and analysis of the multiQC re
 port\nEnd at 17:00 pm\nThird Day – BYOD\nStart at 09:00 am\nDefine the a
 nalysis strategy and launch the start of the analysis of your own data.\nE
 nd at 17:00 pm maximum
LOCATION:24 chemin de borderouge CS 52627 – Auzeville
SUMMARY:Analysis of shotgun metagenomic data - May 2025
URL;VALUE=URI:https://bioinfo.genotoul.fr/index.php/events/analysis-of-shot
 gun-metagenomic-data/
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