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DTSTAMP:20260617T151509Z
UID:1ed42948-7107-45bd-83fd-4a3ad8cb2e21
DTSTART:20191031T090000Z
DTEND:20191031T170000Z
DESCRIPTION:Educators:\nAndreas Weidemann\, Martin Golebiewski (HITS gGmbH\
 , Heidelberg\, Germany)\, Frank Bergmann\, Jürgen Pahle\, Sven Sahle (Uni
 versity of Heidelberg\, Germany) (de.NBI-SysBio) in collaboration with edu
 cators from UK\, New Zealand\, Japan\, Germany\, USA\n\nDate:\nThursday\, 
 October 31st\, 2019\n\nLinks:\nhttp://co.mbine.org/events/tutorial2019\n\n
 Location:\nOkinawa Insitute of Science and Technology Graduate University\
 nOkinawa\, Japan\n\nContents:\nThis tutorial workshop is a satellite of th
 e 20th International Conference on Systems Biology (ICSB).\n\nParticipants
  will learn how to set up computer models of biological systems (e.g. meta
 bolic or signalling networks) using experimental kinetic data and how to s
 imulate them in different systems biology platforms. Hands-on sessions\, l
 ectures and software demonstrations will be included\, providing attendees
  with the necessary skills to access experimental kinetics data from avail
 able resources\, to assemble computer models with these data\, and finally
  to simulate the generated models using simulation tools. Also handling an
 d exchange of biological models based on existing community standards will
  be demonstrated along with the basic principles of the underlying standar
 d formats and how they\nsupport reproducible and FAIR computational modell
 ing.\n\nThe topics covered will include:\n- Reproducibility and FAIR (Find
 able\, Accessible\, Interoperable and Re-usable) data\n- Curation services
 \n- Model setup using different software tools and systems biology platfor
 ms\n- Using experimental data for setting up quantitative models\n- Parame
 ter estimation\, optimization and model fitting\n- Simulation\, analysis a
 nd visualization of biochemical models\, and multicellular modelling\n- Co
 nstraint-based and logical modeling of metabolic and signaling networks\n-
  Database supported modelling: integrated data management and model databa
 ses\n- Community standards and formats for systems and synthetic biology m
 odels\n- Machine learning for model reduction and image analysis\n\nPrereq
 uisites:\nLaptop\n\nKeywords:\nsystems biology\, software tools\, quantita
 tive models\, parameter estimation\, model simulation\, logical modeling\,
  metabolic networks\, model databases\, community standards\n\nTools:\nBio
 Models\, CellDesigner\, COPASI\, Morpheus\, Physiome Model Repository / Op
 enCOR\, SABIO-RK\, SEEK/FAIRDOMhub\, tellurium\, Virtual Cell
LOCATION:Präfektur Okinawa
SUMMARY:COMBINE & de.NBI Tutorial: Modelling and Simulation Tools in System
 s Biology – ICSB 2019 
URL;VALUE=URI:https://www.denbi.de/training/531-combine-de-nbi-tutorial-mod
 elling-and-simulation-tools-in-systems-biology-icsb-2019
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