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PRODID:icalendar-ruby
CALSCALE:GREGORIAN
BEGIN:VEVENT
DTSTAMP:20260619T051533Z
UID:b034a8b5-3bf9-4906-9b34-e5c8627e41ec
DTSTART:20170717T090000Z
DTEND:20170719T170000Z
DESCRIPTION:This workshop will focus on the core steps involved in calling 
 variants with the Broad’s Genome Analysis Toolkit\, using the Best Pract
 ices developed by the GATK team. You will learn why each step is essential
  to the variant discovery process\, what are the operations performed on t
 he data at each step\, and how to use the GATK tools to get the most accur
 ate and reliable results out of your dataset. In the course of this worksh
 op\, we highlight key functionalities such as the GVCF workflow for joint 
 variant discovery in cohorts\, RNAseq-specific processing\, and somatic va
 riant discovery using MuTect2. We also preview capabilities of the upcomin
 g GATK version 4\, including a new workflow for CNV discovery\, and we dem
 onstrate the use of pipelining tools to assemble and execute GATK workflow
 s.
LOCATION:The King's Buildings\, The University of Edinburgh
SUMMARY:GATK Best Practices for Variant Discovery
URL;VALUE=URI:https://genomics.ed.ac.uk/services/gatk-best-practises-varian
 t-discovery
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