This workshop will focus on the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the “Best Practices” developed by the GATK team. You will learn 

why each step is essential to the variant discovery process
what are the operations performed on the data at each step
how to use the GATK tools to get the most accurate and reliable results out of your dataset.

• samtools

Familiarity with

Please note that this workshop is focused on human data analysis. The majority of the materials presented does apply equally to non-human data, and we will address some questions regarding adaptations that are needed for analysis of non-human data, but we will not go into much detail on those points​.

The training will take 3 days, you can register for each day separately