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VERSION:2.0
PRODID:icalendar-ruby
CALSCALE:GREGORIAN
BEGIN:VEVENT
DTSTAMP:20260616T125122Z
UID:e86d06f3-8c0b-4584-8e72-b36e68cfacb3
DTSTART:20200921T090000Z
DTEND:20200923T170000Z
DESCRIPTION:Educators:\nAxel von Kamp\, Steffen Klamt\, Sven Thiele (MPI Ma
 gdeburg)\, Frank T. Bergmann\, Ursula Kummer (University of Heidelberg)\, 
 Wolfgang Müller\, Maja Rey\, Andreas Weidemann\, Ulrike Wittig (HITS) (de
 .NBI-SysBio)\n\nDate:\n21. - 23 September 2020\n\nLocation:\nMPI Magdeburg
 \nSandtorstrasse 1\n39106 Magdeburg\n\nor online\n\nContents:\nKey concept
 s of stoichiometric and kinetic modeling of biochemical networks:\n- stoic
 hiometric matrix and stoichiometric networks\n- steady state flux distribu
 tions\n- principles of constraint-based modeling\n- metabolic flux analysi
 s and flux optimization (flux balance analysis)\n- metabolic pathway analy
 sis with elementary flux modes\n- metabolic network design via minimal cut
  sets\n- simulation of dynamic (kinetic) models\n- sensitivity analysis\n-
  carrying out parameter estimation tasks\n- model exchange using SBML\nDat
 a and model management:\n- manual/programmatic access to reaction kinetics
  data from SABIO-RK\n- storage and exchange of data and models using FAIRD
 OMHub/SEEK\n- modeling specific functionalities in FAIRDOMHub/SEEK\n \nLea
 rning goals:\nDuring this 3-day course\, attendees will learn basic techni
 ques for modeling of biochemical networks including data access and storag
 e due to the FAIR principles. The first day SABIO-RK is used as a resource
  for kinetic data and FAIRDOMHub/SEEK is introduced as a data and model ma
 nagement platform fitted to the needs of systems biologists. The second da
 y introduces principles of stoichiometric and constraint-based modeling co
 upled with hands on exercises using CellNetAnalyzer. The third day continu
 es with kinetic modeling techniques which will be illustrated and exercise
 d with COPASI\n\nThe hands on exercises throughout the three days will ens
 ure that attendees become familiar with the software tools and with analyz
 ing\, creating\, editing\, importing\, simulating and storing biochemical 
 networks.\n\nPrerequisites:\nSome knowledge of mathematical modeling will 
 be advantageous.\nThe participants should bring their own laptop with MATL
 AB installed (if you do not have MATLAB please let us know during registra
 tion).\nDownload and preinstallation of COPASI and CellNetAnalyzer is reco
 mmended but not mandatory.\n\nKeywords:\nCellNetAnalyzer (CNA)\, COPASI\, 
 SBML\, FAIR\, modeling\, kinetic data access\, database\, data and model m
 anagement\n\nTools:\nCellNetAnalyzer\, COPASI\, Matlab\, SABIO-RK\, FAIRDO
 MHub/SEEK
SUMMARY:Tools for Systems biology modeling and data exchange: COPASI\, Cell
 NetAnalyzer\, SABIO-RK\, FAIRDOMHub/SEEK 2020 
URL;VALUE=URI:https://www.denbi.de/training/761-tools-for-systems-biology-m
 odeling-and-data-exchange-copasi-cellnetanalyzer-sabio-rk-fairdomhub-seek-
 2020
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