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DTSTAMP:20260809T112749Z
UID:4bc00d5c-92b7-4034-9c2f-7fdc42bd3f23
DTSTART:20170509T090000Z
DTEND:20170511T000000Z
DESCRIPTION:\nCourse content\nGenome annotation is the process in which loc
 i of interest in a genome are identified\, both in structure and function.
  The structural part includes identifying the number and size of exons and
  introns\, size of UTRs\, and number of isoforms. The functional annotatio
 n\, in turn\, focuses on inferring the biological role of different transc
 ripts.\n\nThe course is aimed at researchers that are involved in on-going
  or upcoming genome projects and wish to deepen their understanding of the
  various forms of data and computational steps required to achieve a compr
 ehensive annotation. The focus of the course will be on non-model eukaryot
 e organisms\, and in particular the structural annotation of protein codin
 g genes. We will use de novo gene finders\, protein alignments and RNA-seq
  data to infer the structure of genes\, and show how to combine these diff
 erent lines of evidence to get the most stable and informative annotation.
  We will also infer the function of these genes using similarity to known 
 proteins as well as the presence of functional domains.\n\nTopics covered 
 will include:\n·       Project planning\n·       Gene finders\n·       
 Protein alignment\n·       RNA-seq assembly\n·       Combined structural
  annotation using Maker2\n·       Functional annotation\n·       Procary
 ote annotation\n·       The NBIS annotation service
SUMMARY:Introduction to Genome Annotation\, 1 hp
URL;VALUE=URI:https://www.scilifelab.se/events/geneannvt17/
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