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DTSTAMP:20260618T081000Z
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DTSTART:20201123T090000Z
DTEND:20201123T170000Z
DESCRIPTION:Educators:\nDominik Kopczynski\, Markus Stepath\, Michael Turew
 icz and Julian Uszkoreit (BioInfra.Prot)\n\nDate:\nMonday\, 2020-11-23\n\n
 Location:\nonline\n\nContents:\nIn this one day course we will show some o
 f BioInfra.Prot's tools provided by de.NBI\, namely “PIA - Protein Infer
 ence Algorithms”\, “BIONDA – A Free Biomarker Database” and “Cal
 ibraCurve”. Besides the tool based sessions we offer a "Proteomics in th
 e Cloud" session where we show advantages of cloud based bioinformatics an
 d give a tutorial how to access the de.NBI cloud. PIA allows to inspect an
 d combine the results of proteomics search engines. The main focus lays on
  the integrated inference algorithms for identification and quantification
  purposes. BIONDA is a free\, up-to-date and user-friendly biomarker and b
 iomarker candidate database that facilitates any kind of research on prote
 in biomarkers and the corresponding diseases. CalibraCurve is a tool inten
 ded for the generation of calibration curves in the context of MRM (target
 ed proteomics) experiments. Such calibration curves are necessary for the 
 selection of suitable transitions. In addition the web service STAMPS will
  be part of this course. It is a pathway-centric service for the developme
 nt of targeted proteomics assays. In combination with Skyline\, it offers 
 a streamlined pipeline for identification and quantification in targeted p
 roteomics analyses and development of targeted proteomics assays.\n\nLearn
 ing goals:\nAttendees of the course will learn how to use the tools PIA\, 
 BIONDA\, CalibraCurve and STAMPS effectively for their daily proteomics ta
 sks. Additionally they will learn how to use the de.NBI cloud.\n\nPrerequi
 sites:\nThis course is for all researches in the field of proteomics. The 
 attendees should have basic knowledge of LC-MS proteomics\, but no prior b
 ioinformatics skills are required. Basic knowledge of how to analyse LC-MS
  data are sufficient. Attendees are required to bring their own laptops. I
 f this is not possible or laptops have very low computing capacities\, ple
 ase contact the organizers.\n\nKeywords:\nProteomics\; Data Analysis\; Ass
 ay Development\; Biomarkers\; de.NBI Cloud
SUMMARY:Introduction to the Cloud for Proteomics Analyses 
URL;VALUE=URI:https://www.denbi.de/training/791-proteomics-tools-in-the-clo
 ud
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