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DTSTAMP:20260618T101541Z
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DTSTART:20180514T090000Z
DTEND:20180515T170000Z
DESCRIPTION:Date: Monday 14th to Tuesday 15th May 2018\nTime: 9.00 to 17.00
 \nLocation: MSTC\, Sherrington Building\, University of Liverpool\, L69 3B
 X\n\nOverview\nThis two day hands-on training course is aimed at students 
 and researchers who want to gain practical understanding of the tools and 
 approaches for protein sequence\, structure and function prediction and an
 alysis.\n\nIn day 1\, participants will be introduced to Jalview - a free 
 desktop application for the visualisation and comparative analysis of prot
 ein\, DNA and RNA sequences. Jalview can integrate data from Ensembl\, Uni
 prot\, PDBe\, Rfam and Pfam\, and can access a range of tools for multiple
  sequence alignment\, conservation analysis and secondary structure and di
 sorder prediction\, including the widely used JPred4.\n\nOn the second day
 \, participants will learn to use Jalview’s 3D structure visualisation c
 apabilities in conjunction with UCSF Chimera\, and take a whistle-stop tou
 r of the methodologies and tools for prediction and analysis of Protein 3D
  structure and function. Participants are encouraged to bring their own pr
 otein analysis problems and time will be reserved at the end of day 2 for 
 discussion.\n\nRegister using the link on the Jalview website:  http://www
 .jalview.org/training/training-courses/Multiple-Sequence-Alignment-with-Ja
 lview-and-Protein-Structure-and\n\nDay 1: Multiple Sequence Alignment and 
 Analysis with Jalview\nWorkshop trainers: Dr Jim Procter and Dr Suzanne Du
 ce\n9    9.15    Introduction to the Workshop\n9.15    10.30    Session 1.
 Loading sequences\, structures and alignments with Jalview\nCoffee break\n
 11    12.30    Session 2. Multiple alignment Creation and Alignment Reliab
 ility\nLunch\n1.30    3pm    Session 3. Phylogenetic trees and subfamily a
 nalysis of Proteins and CDS\nCoffee break\n3.30    5pm    Session 4. Prote
 in secondary structure and disorder prediction\, and working with annotati
 on\n\nDay 2: Protein Structure Analysis and Modelling\nWorkshop trainers: 
 Dr Jim Procter and Dr Dan Rigden\n9    9.15    Introduction to Workshop Da
 y 2\n9.15    9.30    Introduction to Protein 3D Structure\n9.30    10    V
 iewing and Comparing 3D structures with Jalview and UCSF Chimera\n10    10
 .30    Mapping sequence conservation to Biological Assemblies with Jalview
 \nCoffee Break\n11    12.30    Functional analysis of Protein Structures\n
 Lunch\n1.30    2.30    Homology modelling and model quality evaluation\n2.
 30    3.15    Ab initio models and searching for fold matches\n3.15    3.3
 0    Wrap up: Function Analysis and 3D models\nCoffee Break\n4pm    5pm   
  Analyse your own protein sequences and structures.\n
LOCATION:MSTC\, Sherrington Building\, University of Liverpool
SUMMARY:Multiple Sequence Alignment with Jalview and Protein Structure and 
 Function Modelling
URL;VALUE=URI:http://www.jalview.org/training/training-courses/Multiple-Seq
 uence-Alignment-with-Jalview-and-Protein-Structure-and
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