Keywords: single-cell

Venue: Erasmus Medical Center, Dr. Molewaterplein 40

City: Rotterdam

Country: Netherlands

Postcode: 3015 GD

Learning objectives:

• Analyze of 16S rRNA sequencing data using the mothur toolsuite in Galaxy
• Be able to use an Ansible playbook to install different flavors of Galaxy for different purposes
• Become comfortable converting text-based files in a variety of ways.
• Familiarize yourself with data manipulation tools in Galaxy
• Have an understanding of how Galaxy's Ansible roles are structured and interact with one another
• Learn how to extract and run a workflow
• Learn how to share a history
• Learn how to upload a file
• Learn how to use a tool
• Learn how to view histories
• Learn how to view results
• Perform basic text manipulation tasks in Galaxy
• Reason about the expected outcome of tools
• Using a mock community to assess the error rate of your sequencing experiment
• Visualize sample diversity using Krona and Phinch

Organizer: Helena Rasche (https://orcid.org/0000-0001-9760-8992), Saskia Hiltemann (https://orcid.org/0000-0003-3803-468X)

Event types:

• Workshops and courses

Sponsors: Gallantries: Bridging Training Communities in Life Science, Environment and Health

Instructors: Bérénice Batut, Fotis E. Psomopoulos

Scientific topics: Database management, Informatics, Data management, Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding