BEGIN:VCALENDAR
VERSION:2.0
PRODID:icalendar-ruby
CALSCALE:GREGORIAN
BEGIN:VEVENT
DTSTAMP:20260615T160016Z
UID:3a28cdc4-8b23-4afd-9eef-ecaa81a3776e
DTSTART:20120426T060000Z
DTEND:20120427T160000Z
DESCRIPTION:\n	This course covers several aspects of next generation sequen
 cing (NGS) data analysis and visualization\, ranging from general tasks su
 ch as quality control\, alignment and genomic region matching to the more 
 specific tasks such as peak detection (ChIP-seq) and finding differentiall
 y expressed genes (RNA-seq). The course consists of lectures and hands-on 
 exercises. As the user-friendly Chipster software is used for the exercise
 s\, no prior knowledge of NGS data analysis or unix is required. This cour
 se is primarily targeted for researchers who already have NGS data\, or wh
 o are planning to start such experiments soon.\n\n	 \n\n	Chipster integra
 tes a comprehensive collection of analysis tools for high-throughput data 
 such as microarrays\, proteomics and NGS. For NGS data there is currently 
 functionality for ChIP-seq\, RNA-seq\, miRNA-seq\, methyl-seq and CNA-seq 
 data (for details\, please see NGS tool content). Users can save their ana
 lysis pipelines as reusable automatic workflows\, and both workflows and a
 nalysis sessions can be shared with colleagues. Access to CSC's Chipster s
 erver is free of charge for Finnish universities.\n		Program\n	\n		\n			Th
 ursday April 26\, 2012\n		\n				Introduction to Chipster\n			\n				Quality
  control and filtering reads (FastQC\, FastX\, PRINSEQ)\n			\n				Alignmen
 t to reference genome (Bowtie\, BWA\, TopHat)\n			\n				Manipulation of BA
 M files (Samtools)\n			\n				Visualization of aligned reads in their genom
 ic context (Chipster genome browser)\n			\n				Matching genomic regions (B
 EDtools\, HTSeq)\n		\n			Friday April 27\, 2012\n		\n				ChIP-seq: Peak de
 tection (MACS)\, retrieving nearby genes and performing pathway analysis f
 or them.\n			\n				RNA-seq: Finding differentially expressed genes (Cuffli
 nks\, edgeR\, DESeq).\n		\n\n\nhttps://events.prace-ri.eu/event/67/
SUMMARY:Next-Generation Sequencing Workshop
URL;VALUE=URI:https://events.prace-ri.eu/event/67/
END:VEVENT
END:VCALENDAR