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DTSTAMP:20260710T160157Z
UID:94c8cde9-e89f-4931-9bb1-a9fd25a9476e
DTSTART:20251208T080000Z
DTEND:20251210T160000Z
DESCRIPTION:Educators:\nProf. Dr. Boas Pucker\, Katharina Wolff\, Nancy Cho
 udhary\, Shakunthala Natarajan\, Samuel Nestor Meckoni\, Julie A. V. S. De
  Oliveira (Associated Partner)\n\nDate:\n08.12.2025-10.12.2025\n\nLocation
 :\nKirschallee 1\, 53115 Bonn\, Germany\n\nContents:\nUnlock the secrets o
 f plant genomes with this intensive\, hands-on course in "Plant Genome Seq
 uence Assembly and Annotation". Designed for doctoral students and postdoc
 toral researcher in genomics and bioinformatics\, this course offers pract
 ical training in processing and assembling Oxford Nanopore Technologies (O
 NT) long-read sequencing data. Participants will learn to perform quality 
 control\, assemble high-quality plant genome sequences using tools like HE
 RRO\, Shasta\, and NextDenovo2\, and carry out structural genome sequence 
 annotation with HISAT2/STAR\, GeMoMa\, and BUSCO. The course emphasizes re
 al-world applications\, providing participants with the skills to interpre
 t\, validate\, and refine genome assemblies and gene models specific to pl
 ant systems. Whether you are starting your first genome project or looking
  to enhance your bioinformatics toolkit\, this course will give you the ex
 pertise to tackle complex plant genomic data with confidence.\n\nLearning 
 goals:\nHow to get from ONT long reads to a genome sequence with correspon
 ding gene models\n\nPrerequisites:\nBasic experience with command line\n\n
 Keywords:\ngenome sequence\, assembly\, long reads\, gene models\, plant g
 enomics\n\nTools:\nHERRO\, Shasta\, NextDenovo2\, HISAT2/STAR\, BUSCO\, Ge
 MoMa
LOCATION:Kirschallee\,  Kirschallee
SUMMARY:Plant Genome Sequence Assembly and Annotation
URL;VALUE=URI:https://www.denbi.de/training-courses-2025/1948-plant-genome-
 sequence-assembly-and-annotation
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