BEGIN:VCALENDAR
VERSION:2.0
PRODID:icalendar-ruby
CALSCALE:GREGORIAN
BEGIN:VEVENT
DTSTAMP:20260707T114912Z
UID:6249ad2f-6ad5-4d79-9d7c-196e2b1b444d
DTSTART:20181117T080000Z
DTEND:20181118T163000Z
DESCRIPTION:Galaxy is an open source\, web-based platform for data intensi
 ve biomedical research (more info here: https://usegalaxy.org/). Galaxy is
  accessible on various servers word-wide for academic researchers.\nRNA Se
 quencing is one of the most frequently used method to charachterize the tr
 anscriptional status of a cell or a system. Galaxy provides a straightforw
 ard\, GUI (Graphical User Inferface) based access to a wide series of bioi
 nformatic programs needed for genomic investigations.\nThe Course is part 
 of a longer series of bioinformatic training events that covers various to
 pics from very basics of bioinformatics and GUI based tools to unix based 
 programs and R programming. \nTrainer of the course is Dr Beata Scholtz.\
 nThe course is free but registration is mandatory.\nThe language of the co
 urse is English. This will be a two days\, hands on computer course. Zero
  prior bioinformatic knowledge is needed. \nWe inviting life science res
 earchers who are dealing with genomic datasets and would like to understan
 d basic concepts of NGS data analysis.\nThe course will be run on local co
 mputers while Galaxy itself runs on servers\, in this case our server. \n
 Venue: This is a computer room of the Medical Faculty located in the Dean'
 s Office Building Shared with the International Student Coordination Cente
 r. The place can be easily accessed by Tram no 1\, "Egyetem tér" station.
   This building is on the left of the main building\, the second building
  on the left of the university church. (On GoogleMaps is called OEC Erasmu
 s Office)\nGPS coordinates: 47°33'16.3"N 21°37'26.4"E\, alternative fo
 rmat: 47.554517\, 21.624006\nWe plan to provide coffee and refreshments in
 cluding a sandwich lunch. \n\nBy the end of the course attendees should u
 nderstand basic steps of NGS data analysis on RNA Seq and CHIP-Seq dataset
 s. \n\nWe can not provide you lodging but if needed use booking.com for y
 our convenience. \nProgramme:\n2018. 11. 17.  Saturday\n\n9:30-10:00 Cof
 fee and Welcome!\n\n10:00-12:00 \nIntroduction to Galaxy.  Loading data i
 nto Galaxy from different sources.  Quality assessment: FASTQC (Colon cc 
 data). Data preprocessing-quality correction: Trimmomatic.  Alignment to 
 reference sequence.\n\n12:00-13:00 Lunch break\n\n13:00- 15:00 \nPost-alig
 nment quality control.  Build a workflow. Transcript and gene level diffe
 rential expression.  \n\n15:00-15:30 Coffee break\n\n15:30-17:00\nTranscr
 ipt and gene level differential expression (continued).\n\n2018. 11. 18. 
  Sunday\n\n9:00-10:00\nTranscript and gene level differential expression 
 (continued).\n\n10:00-10:30 Coffee break\n\n10:30-12:30\nMutation analysis
  of RNAseq data.  Peeking out of Galaxy: annotation of mutations (VEP). 
  \n\n12:30-13:30  Lunch break\n\n13:30-14:30\nVisualization of aligned d
 ata in Integrated Genomic Viewer.  Single nucleotide variant quality asse
 ssment in IGV. Transcript assembly visualization in IGV (Sashimi plot). \n
 \n14:30-15:00 Coffee Break\n\n15:30-17:00 \nChIP-seq data analysis in Gala
 xy.\n\n\n
LOCATION:OEC ERASMUS Office 
SUMMARY:RNA Seq Data Analysis by using the Galaxy platform
URL;VALUE=URI:https://www.eventbrite.co.uk/e/rna-seq-data-analysis-by-using
 -the-galaxy-platform-registration-51516339759
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