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DTSTAMP:20260715T233803Z
UID:6fd0d9eb-2b39-45c6-923d-a4ca791ebfe4
DTSTART:20251215T090000Z
DTEND:20251216T170000Z
DESCRIPTION:This training session\, organized jointly with the Sigenae plat
 form\, is designed to introduce NGS data\, in particular Illumina Solexa t
 echnologies with command line. You will discover the new sequence formats\
 , the assembly formats and the known biases of these technologies. You wil
 l use mapping on reference genome software\, polymorphisms detection with 
 the GATK pipeline and alignment visualization software.\n\nThis training i
 s focused on the practice. It consists of modules with a large variety of 
 exercises:\n\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence qualit
 y. Read mapping.\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.
 \nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annot
 ation (SNPeff / SNPsift).\n \nThe session will take place in the room ‘s
 alle de formation’ at INRAE center of Toulouse-Auzeville.\n\nPrerequisit
 es: ability to use a Unix environment (see Unix training) and Cluster (see
  Cluster training).\n \nTool box: FastQC\, BWA\, Samtools\, Picard tools\,
  GATK\, SnpSift / SnpEff\, IGV.
LOCATION:24 chemin de borderouge CS 52627 – Auzeville
SUMMARY:SHORT-READ ALIGNMENT AND SMALL SIZE VARIANTS CALLING - December 14-
 16 2025
URL;VALUE=URI:https://bioinfo.genotoul.fr/index.php/events/alignment-and-sm
 all-size-variants-calling/
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