Variant Detection using Galaxy is a one-day, hands-on workshop that will cover the concepts of detecting small variants, including SNPs and small indels, from next-generation sequencing data. You will use and compare a number of popular detection tools, visualise variants using a genome browser, and annotate SNPs for predicting biological effects.
Course Outline
-During this course you will learn about;
-The tool and workflows of SNP and indel detection
-Quality filtering and other techniques for improving SNP prediction accuracy
-Comparison of variant detection software
-the use of the Galaxy platform for variant detection analysis