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DTSTAMP:20260527T084424Z
UID:68d78586-38d5-4138-9e06-40fcfdd44197
DTSTART:20260615T070000Z
DTEND:20260619T150000Z
DESCRIPTION:Educators:\nSebastian Lobentanzer (Associated member)\, Johann 
 Dreo\, Claire Laudy\, Matthieu Najm\, Edwin Carreno\, Inga Ulusoy\n\nDate:
 \n15-19.06.2026\n\nLocation:\nHeidelberg\, Im Neuenheimer Feld 205\n\nCont
 ents:\nMany modern biomedical methods benefit from the availability of pri
 or knowledge\, for example about genes\, proteins\, or diseases. Knowledge
  graphs\, i.e.\, representations of prior knowledge in machine-readable gr
 aph form\, have become the quasi-standard for storing\, manipulating\, and
  sharing biomedical prior knowledge. To meet the needs of broad user commu
 nities in generating knowledge graphs\, we have developed BioCypher\, a mo
 dular framework for the creation of knowledge graphs based on ontologies\,
  targeting single cell and spatial omics\, microbiomics\, metabolomics\, a
 nd various multi-omics modelling and machine learning methods.\n\nIn this 
 workshop\, we will learn about knowledge representations\, knowledge graph
 s\, ontologies\, and data structures\, and put this knowledge to practical
  use with BioCypher. The workshop will also contain a module on informatio
 n fusion\, leveraging OntoWeaver to combine data from different sources an
 d joining this information into one single graph. Further\, we will learn 
 how to utilize generative AI to upscale to more complex projects.\n\nLearn
 ing goals:\n(1) How to create knowledge graphs from “your” data and im
 port them into a graph database for further studies. (2) Fundamental princ
 iples of research software development\, communal open-source software dev
 elopment and using AI agents in coding. (3) Approaches in information fusi
 on and data harmonization.\n\nPrerequisites:\nBasic Python knowledge\, Lap
 top with Python installation / IDE\n\nKeywords:\nKnowledge graphs\, Biomed
 ical science\, Ontologies\, Knowledge extraction\, Information fusion\, Ag
 entic automation\n\nTools:\nBioCypher\, OntoWeaver\, Croissant\, GitHub Co
 pilot / Claude / Cursor / ...
LOCATION:Im Neuenheimer Feld 205\, 205 Im Neuenheimer Feld
SUMMARY:Workshop - Establishing a knowledge graph community in biomedical s
 cience
URL;VALUE=URI:https://www.denbi.de/training-courses-2026/2089-establishing-
 a-knowledge-graph-community-in-biomedical-science
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