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- European Bioinformatics Institute (EBI)6
- iAnn2
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- HDRUK2
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- Exomes2
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- Workshops and courses6
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Target audience
- This course is aimed at wet-lab researchers at within Latin America undertaking plant breeding and population genetics interested in applying next-generation sequencing to screen individuals. Please note this course will be taught in English, however the trainers are fluent in either Spanish or Portuguese, and can offer language support where feasible. A number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form. Knowledge in UNIX and NGS technologies is required. Therefore, these free resources should be studied beforehand: Basic introduction to the Unix environment: www.ee.surrey.ac.uk/Teaching/Unix Introduction and exercises for Linux: https://training.linuxfoundation.org/free-linux-training Basic R concept tutorials: www.r-tutor.com/r-introduction You may also find this video overview of GBS useful.1
- This course is aimed at wet-lab researchers within Latin America (excluding Chile and Uruguay due to funding restrictions) who are working with and/or generating their own crop genomic data or who are working on genotyping technologies, including data analysis software development. Researchers who apply for CABANA courses should have projects in one or more of the CABANA challenge areas (sustainable crop production, communicable diseases, protection of biodiversity). Please note this course will be taught in English, however some trainers are fluent in either Spanish/Portuguese, and can offer language support where feasible. Priority will also be given to those who have not attended a CABANA event yet. Scientists from underrepresented ethnic and gender groups are especially encouraged to apply for this workshop, for example women and those with Black and/or Indigenous heritage. Prerequisites: basic computational or previous bioinformatics experience is required for this workshop, such as basic commands in R. Undergraduate-level knowledge of plant biology would be an advantage. Please note: The course will use genomic data from crop plant species throughout the week. It will not explore in detail methods for assembling genomes.1
- This course is aimed at wet-lab researchers at any career stage within Latin America undertaking pathogen population genetics and surveillance, interested in applying next generation sequencing to virus identification. Those working in plant protection organizations and/or academia are welcome to apply, and priority will be given to those who have not yet attended a CABANA workshop. Please note this course will be taught in English, however the trainers are fluent in Spanish, and can offer language support where feasible. A number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form. Priority will be given to those who have not previously been awarded a CABANA fellowship. Knowledge in R and NGS technologies is required. Therefore, these free resources should be studied beforehand: Basic R concept tutorials: www.r-tutor.com/r-introduction https://r4ds.had.co.nz/tidy-data.html Learning outcomes1
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Instructor
- Andrés Gatica-Arias2
- Luis Barboza2
- Alexandra Holinski1
- Baron Koylass1
- Brad Till1
- Bradley Till1
- Carla Filippi1
- Carla Valeria Filippi1
- Diana Lopez1
- Ensembl Outreach Team1
- Gabriela Merino1
- Jan Kreuze1
- José Pablo Jiménez1
- Manuel Humberto Reyes-Valdés1
- Mauricio Montero1
- Natalia Barboza1
- Noelle Anglin1
- Rebeca Campos-Sanchez1
- Ricardo Alcalá Briseño1
- Ricardo Chinchilla1
- Sarah Dyer1
- Segundo Fuentes1
- Walter Barrantes1
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