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Keyword
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Scientific topic
- Bioinformatics83
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Operation
- Data handling32
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- Data brokering20
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- Data analysis8
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- Allele calling2
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- Exome variant detection2
- File format conversion2
- File formatting2
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- Genome variant detection2
- Germ line variant calling2
- Molecular dynamics2
- Molecular dynamics simulation2
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- Optimisation and refinement2
- Protein dynamics2
- Somatic variant calling2
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- Variant calling2
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- de novo mutation detection2
- Attribute selection1
- Binding site prediction1
- Biological pathway analysis1
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- Data extraction1
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- Peptide-protein binding prediction1
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- Protein binding site detection1
- Protein binding site prediction1
- Protein contact map prediction1
- Protein design1
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- Protein folding pathway prediction1
- Protein motion prediction1
- Protein property calculation1
- Protein property calculation (from sequence)1
- Protein property calculation (from structure)1
- Protein property rendering1
- Protein redesign1
- Protein secondary structure visualisation1
- Protein structural property calculation1
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Tool
- Data Stewardship Wizard21
- European Nucleotide Archive (ENA)8
- RDMkit7
- Ontology Lookup Service6
- AlphaFold 24
- AutoDock Vina4
- SPCI4
- PyMOL3
- FAIRDOM-SEEK2
- Gromacs2
- WorkflowHub2
- ANASTASIA1
- AlphaCharges1
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- AlphaFind1
- BioSamples1
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- Open PHACTS API1
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- PDBe1
- PDBe-KB1
- Snakemake1
- SoluProt1
- SoluProtMutsupDB1
- TADbit1
- Tamarind1
- TmAlphaFold database1
- edgeR1
- pyCaverDock1
- tidybulk1
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Venue
- , 291
- online18
- European Bioinformatics Institute, Hinxton14
- Online14
- United Kingdom13
- SIB10
- EBI, Wellcome Genome Campus8
- EMBL-EBI, Wellcome Genome Campus7
- Zoom4
- EMBL Heidelberg, 1 Meyerhofstraße3
- Ghent - VIB/UGent FSVM II, Technologiepark 753
- Microsoft Teams3
- Myths and Realities of Personalised Medicine: the Genetic Revolution3
- Pam Liversidge Building, Design Studio 1 - D06, or ONLINE3
- , Wellcome Genome Campus2
- Earlham Institute (EI), Colney Lane2
- Frankfurt am Main2
- Freiburg im Breisgau2
- Manchester Cell-Matrix Centre2
- Saarbrücken2
- University of Cambridge, Downing Street2
- University of Sheffield, or ONLINE2
- 17. listopadu 1192/12, 12 17. listopadu1
- 17. listopadu, 17. listopadu1
- Aalto campus - Otakaari 1, lecture room U9 (2nd floor) / limited online participation 1
- Australia1
- BMC Trippelrummet Husargatan 3, entrance C111
- Barber House Boardroom (PROVISIONAL) or ONLINE1
- Barcelona Supercomputing Centre (BSC)1
- Bartolome House Seminar Room EG03, or ONLINE1
- Bartolome House, Seminar Room EG03, University of Sheffield, or ONLINE1
- Bartolome House, Seminar Room EG03, or ONLINE1
- Berlin1
- Bhupat and Jyoti Mehta School of Biosciences, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras1
- Bielefeld University, 25 Universitätsstraße N7-114, UHG1
- Campus Brussels, Maastricht University, Tervurenlaan 1531
- Center of Data and Knowledge Integration for Health - CIDACS, Instituto Gonçalo Moniz (IGM), technical-scientific unit (FIOCRUZ), R. Mundo 121, Ed. Tecnocentro, Trobogy1
- Craik-Marshall Building1
- Cripps Court Magdalene College, 1-3 Chesterton Road1
- Delivered online virtually, with face-to-face sessions on Teams.1
- Deutschland1
- Digital1
- EMBL-EBI, EMBL EBI1
- EMBL-EBI, Wellcome genome campus1
- Erasmus Medical Center, Dr. Molewaterplein 401
- Espoo1
- European Bioinformatics Institute1
- Eye Filmmuseum1
- Faculty of Pharmacy, University of Porto1
- Faculty of Science, Palacky University Olomouc, 17. listopadu 1192/121
- Genomic Medicine: Transforming Patient Care in Diabetes1
- Georges-Köhler-Allee 79, 79 Georges-Köhler-Allee1
- Heidelberg1
- Hotel NH Padova, Via Niccolò Tommaseo, 611
- INESC, 9 Rua Alves Redol1
- INESC-ID, Rua Alves Redol1
- Instituto de Medicina Molecular (IMM), Avenida Professor Egas Moniz1
- Italy1
- Kamenice 5 625 00 Brno-Bohunice Česko1
- Kassel1
- Keilaranta 14 / Online1
- Korinth1
- Köln1
- L69 7ZX1
- Leonardo Hotel Manchester Central, 56 Great Bridgewater St1
- Life Science Center, Keilaranta 14 / Online1
- Narva mnt 18, room 20211
- Norway1
- On Line - ZOOM1
- On Line - ZOOM platform1
- On line - via ZOOM1
- On line event1
- Online / CSC - Keilaranta 141
- Online via Zoom1
- Online workshop delivered via Zoom1
- Online, West Mains Road1
- Palacky University Olomouc (UPOL) Faculty of Science tř. 17. listopadu 12, Olomouc 77900, Czech Republic rooms 3.002 (tutorials/challenge), 3.003 (lectures)1
- RADA Studios, 16 Chenies Street1
- Rom1
- Room 401.401, The Faculty of Engineering (Building 401) 20 Symonds Street, Auckland Central1
- TF fløy III, 1430 Kajaveien1
- The Open University - Online1
- USP / FIOCRUZ Amazonas, Rua Terezina, 476 - Adrianópolis1
- Universiteitssingel, Universiteitssingel1
- University of Costa Rica (UCR), Ciudad universitaria Rodrigo Facio Brenes1
- University of Liverpool, Brownlow Hill1
- University of Ljubljana, Faculty of Medicine1
- Uppsala University, SciLifeLab, BMC, Husargatan 3, Uppsala1
- Via Principessa Margherita, 461
- Virtual (Slack)1
- Weinberg 3, 3 Weinberg1
- Wyndham Garden Berlin Mitte, 116A Osloer Straße1
- děkanát Přírodovědecká fakulta Univerzity Palackého 17. listopadu 1192/121
- on site, The trainer will come to your lab1
- online, with satellite events in some locations, for example CSC - IT Center for Science in Espoo, Finland.1
- register for online participation: https://attendee.gotowebinar.com/register/14291236370652551811
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City
- Streamed157
- Online136
- Liverpool10
- Sheffield, or online8
- Heidelberg7
- Berlin6
- online6
- Espoo5
- Bologna4
- Manchester4
- Nicosia4
- Freiburg im Breisgau3
- Lisboa3
- Olomouc3
- Zwijnaarde3
- Barcelona2
- Cambridge2
- Frankfurt am Main2
- Olomouc 92
- Saarbrücken2
- Tartu2
- Thessaloniki2
- Uppsala2
- Zoom2
- 1150 Sint-Pieters-Woluwe1
- Auckland1
- Ayia Napa 1
- Bielefeld1
- Brno1
- Cardiff1
- Coimbra1
- Deciphering the epigenetic landscape of the brain: Innovations in chromatin profiling with single-cell nano-CUT&Tag. Marek Bartosovic https://youtu.be/opdcnqf63TA1
- Edinburgh1
- Guelph1
- Göttingen1
- Halle (Saale)1
- Halle Saale1
- Hinxton1
- How does epigenetic mechanism impact Type 2 diabetes? Charlotte Ling https://youtu.be/c0yk3rb7Jdg1
- Italy1
- Kassel1
- Korinth1
- Köln1
- Leiden1
- Leuven/Ghent1
- Ljubljana1
- London1
- Lund1
- Maastricht1
- Milton Keynes1
- Multiomics Data Integration - A Translational Research Perspective. Animesh Acharjee https://youtu.be/TIdR1NQsT3o1
- N/A1
- Norwich1
- Oslo1
- Padova1
- Porto1
- Procida1
- Rom1
- Rotterdam1
- Sheffield1
- Transposon Genomics — From Single Loci To Single Cells. Gale Hammell https://youtu.be/W1Osga9fBV81
- Trondheim1
- n/a- online1
- online via Zoom1
- virtual1
- Ås1
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Sponsor
- NERC27
- ELIXIR Europe20
- German Network for Bioinformatics Infrastructure Service, Training, Cooperations & Cloud Computing16
- Australian BioCommons15
- Centre for Digital Life Norway14
- Melbourne Bioinformatics12
- The University of Melbourne12
- University of Freiburg12
- ELIXIR Belgium11
- ABRomics7
- Erasmus Medical Center7
- Institut Français de Bioinformatique7
- Avans Hogeschool6
- H3ABioNet6
- The Pennsylvania State University6
- ELIXIR CZ5
- ELIXIR Converge5
- ELIXIR Norway5
- NanoCommons5
- This course is funded as part of the UKRI Innovation Scholars. Data Science Training in Health and Bioscience call (DaSH). (MR/V038966/1)5
- ELIXIR4
- ELIXIR-CONVERGE4
- EU H20204
- RDA-Portugal4
- 101100604 - DIGITAL-2022-TRAINING-023
- Co-funded by the European Commission3
- Ministry of Science, Research and Arts3
- NanoSolveIT3
- Palacký University Olomouc3
- Pôle National de Données de Biodiversité3
- SciComm Academy3
- de.NBI3
- AIBIO-UK2
- Aurora Alliance2
- BioMedData2
- EOSC | FAIR2Adapt2
- EU H2020 NanoCommons2
- Funded by the European Union2
- German Competence Center Cloud Technologies for Data Management and Processing2
- IRCCS Ospedale San Raffaele2
- LINQ management GmbH2
- Muséum national d'Histoire naturelle2
- Pan-Africa network for genomic surveillance of poverty related diseases and emerging pathogens2
- Pan-African Consortium for the Evaluation of Antituberculosis Antibiotics2
- Research Council of Norway2
- South African National Bioinformatics Institute, University of the Western Cape2
- Swiss Tropical and Public Health Institute2
- The Carpentries2
- The European & Developing Countries Clinical Trials Partnership2
- The European Union2
- The Foundation for Innovative New Diagnostics2
- Università Vita-Salute San Raffaele2
- Aurora1
- Austrian Science Fund grant W012131
- BioData.pt1
- COST Associaion1
- COST Association1
- CSUC1
- Center for Experimental and Clinical Imaging Technologies Zurich (EXCITE Zurich)1
- DATA TERRA1
- EASI-genomics1
- ELIXIR 1
- ELIXIR BFSP Commissioned Service1
- ELIXIR Bioinformatics Industry Forum1
- ELIXIR Slovenia1
- ELIXIR Training Platform1
- ELIXIR-CZ1
- ELIXIR-DATAREX1
- ELIXIR-SE1
- ELIXIR-STEERS1
- EOSC OSCARS1
- ERASMUS+1
- Enantis1
- European Union1
- FEUGA1
- Flanders BioImaging1
- Gallantries: Bridging Training Communities in Life Science, Environment and Health1
- Genetics Society of AustralAsia1
- Germano de Sousa1
- HPC Carpentry1
- Impact evaluation at Node-level - getting it done” Commissioned service from ELIXIR1
- Libra1
- Loschmidt Laboratories1
- Merck1
- NFDI4BioImage1
- NanoRigo1
- Nanocommons1
- NeIC1
- Nordic e-Infrastructure Collaboration (NeIC)1
- Novogene1
- OLISSIPO1
- OSCARS (EU/Horizon)1
- Oeiras Valley1
- PHENET1
- Palacky University Olomouc1
- RiskGone1
- SGS1
- SciLifeLab1
- SciLifeLab/KAW DDLS programme1
- Seqera1
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Target audience
- Researchers68
- PhD students46
- Life Science Researchers28
- Graduate students22
- All postgraduates18
- Master students17
- Industry16
- Academics15
- Post Docs15
- PhD candidate13
- mixed audience13
- PhD11
- Professors11
- bioinformaticians11
- Beginner9
- Students9
- Wet-lab researchers and bioinformaticians9
- PhD Students8
- Technicians8
- Biologists7
- Life Scientists7
- PI7
- data steward / data manager7
- Anyone intersted in GWAS and using the H3Africa genotyping chip6
- Senior scientist/ Principal investigator6
- data stewards6
- Life sciences5
- PIsSenior scientist/ Principal investigator5
- PhD candidates5
- Researcher in life sciences5
- Undergraduate students5
- post-docs5
- postdoctoral researchers5
- reproducible research5
- Bioinformatician4
- Bioinformaticians4
- Bioinformaticians and wet-lab biologists who can program in Perl, Python or R.4
- Biologists, Genomicists, Computer Scientists4
- Clinicians4
- Graduate Students4
- Graduates, postgraduates, and PIs, who are using, or planning to use, RNA-seq technology in their research and want to learn how to process and analyse RNA-seq data.4
- Masters students4
- Molecular Biologists4
- PhD student4
- Researcher4
- Scientists4
- Trainers4
- Training Designers4
- data managers4
- project manager4
- researchers4
- Academic3
- Bioinformaticians and wet-lab biologists who can program in Python or R.3
- Data Scientists3
- Data managers3
- Data stewards3
- Early Career Researchers (ECRs)3
- Expert Support3
- Government3
- Graduates, postgraduates, and PIs, who are using, or planning to use, single cell RNA-seq technology in their research and want to learn how to process and analyse single cell RNA-seq data.3
- Graduates, postgraduates, and PIs, who are using, or planning to use, the statistical software R to manipulate and analyse NGS and other data in their research. This is an introductory level course: no prior experience of R is necessary before starting the workshop.3
- Graduates, postgraduates, and PIs, without any previous command-line experience, who want to learn to use the Linux command-line in order to be able to work with large data files.3
- Intermediate3
- Job seeker3
- Post-Docs3
- Postdoctoral researchers3
- Research presentation3
- Small and Medium-sized Enterprises (SMEs)3
- Student3
- Training instructors3
- data manager3
- life scientists3
- software developers, bioinformaticians3
- Beginners2
- Biomedical researchers2
- Data Scientist2
- Early Career Researcher2
- Early career investigators2
- Evolutionary Biologists2
- General Interest2
- HPC users2
- Industry professionals, and people with a keen interest in the subject.2
- Life scientists2
- Pathologists2
- Plant research2
- Post docs2
- PostDoc2
- PostDocs2
- Postgraduate students2
- Principal Investigators2
- Research Assistants and Research Associates2
- Statistician2
- This course is aimed at advanced PhD students and post-doctoral researchers who are applying or planning to apply high throughput sequencing technologies in cancer research and wish to familiarise themselves with bioinformatics tools and data analysis methodologies specific to cancer data. Familiarity with the technology and biological use cases of high throughput sequencing is required, as is some experience with R/Bioconductor (basic understanding of the R syntax and ability to manipulate R objects) and the Unix/Linux operating system.2
- This course is aimed at individuals working across life sciences who have little or no experience in bioinformatics. Applicants are expected to be at an early stage of using bioinformatics in their research with the need to develop their knowledge and skills further. No previous knowledge of programming is required for this course; group projects may give you the opportunity to learn basic programming, but participants will be supported in this by their mentors. Depending on your chosen project, an introductory programming tutorial may be given as homework prior to attending the course.2
- This course is intended for researchers who need to analyse genomic data in order to call genomic variants. Aside from a basic understanding of molecular biology, attendees must have a working knowledge of how to use the Linux BASH command line; our 1-day 'Linux for bioinformatics' course is a suitable background.2
- This workshop is aimed at new and experienced managers of bioinformatics core facilities, or other facilities that support their users to analyse and interpret large biomolecular data sets. This course will not provide a platform for teaching hands-on bioinformatics analysis.2
- Training Coordinators2
- Training Organisers2
- Young researchers, Members of the Italian Society of Biochemistry and Molecular Biology (SIB)2
- beginner bioinformaticians2
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Language
- English460
- Czech1
- Italian1
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Collection
- ELIXIR Biodiversity Community25
- PHENotyping and EnviroTyping (PHENET training collection)14
- ELIXIR Systems Biology Community: training events and materials7
- HemaFAIR Training: Applying FAIR Principles in Hematology Research5
- ELIXIR Toxicology Community2
- Impact of research infrastructures2
- Single-cell Omics Community - collection of courses and materials1
- VEIS - Value of the EGA for Industry and Society1
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Instructor
- Janick Mathys31
- Wandrille Duchemin31
- Aleena Mushtaq27
- Geert van Geest15
- Michal Szpak15
- Robin Engler15
- Benjamin Moore12
- Emily Perry12
- Tania Wyss Lozano12
- True Colours12
- Wendi Bacon11
- Gustavo Ruiz Buendia10
- Nancy George10
- Birgit Meldal9
- Kalpana Panneerselvam9
- Thuong Van Du Tran9
- Typhaine Paysan-Lafosse9
- Agnes Uhereczky8
- Anna Swan8
- David Armstrong8
- Dayane Rodrigues Araujo8
- Louisse Paola Mirabueno8
- Alexandra Holinski7
- Baron Koylass7
- Emily Bowler-Barnett7
- Alexandre Bonvin6
- Andrew Hercules6
- Bruna Piereck6
- David Wishart6
- Markus Müller6
- Nandana Madhusoodanan6
- Rahuman Sheriff6
- Rossana Zaru6
- Sam Holt6
- Sarah Morgan6
- Ugis Sarkans6
- Eliot Ragueneau5
- Gerard Kleywegt5
- Guillaume Bourque5
- Lauren Erdman5
- Mathieu Bourgey5
- Melissa Davies5
- Osman Salih5
- Paul Denny5
- Pedro Raposo5
- Thawfeek Varusai5
- Tom Hancocks5
- William Hsiao5
- Ajay Mishra4
- Alex Bateman4
- Alexander Botzki4
- Alexey Larionov4
- Björn Grüning4
- Bérénice Batut4
- Daniela Brites4
- Dona Shaju4
- Elisabeth Gasteiger4
- Fabio Madeira4
- Finlay Maguire4
- Fiona Brinkman4
- Frédéric Bastian4
- James Collier4
- James Stephenson4
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