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- European Bioinformatics Institute (EBI)2
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Event type
- Workshops and courses2
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Target audience
- This course is aimed at scientists working with bioimage data across the life sciences. It is suitable for those involved in creating bioimages or taking their first steps in analysis. The content would also be suitable for those wanting to learn more about the BioImage Archive and gain experience with machine learning approaches for image analysis. The programme will be of particular interest to bio-image analysts with questions relating to the use of ‘big data’ and using the wealth of publically available data curated in the BioImageArchive. The course should be accessible to members of the bioimaging community and does not require prior experience with machine learning methods or use of the BioImage Archive is necessary, but applicants are encouraged to explore the resources below before starting their application. Applicants should be comfortable with basic programming tasks and have experience working with Python. Prerequisite reading: Nature: BioImage Archive: A call for public archives for biological image data biorxiv: ZeroCostDL4Mic: an open platform to simplify access and use of Deep-Learning in Microscopy Nucleic Acids Research: The BioStudies database—one stop shop for all data supporting a life sciences study Nature Methods: EMPIAR: a public archive for raw electron microscopy image data Nature: Image Data Resource: a bioimage data integration and publication platform BioModelZoo1
- This course is aimed at scientists working with biomage data across the life sciences. It is suitable for those involved in creating bioimages or taking their first steps in analysis. The content would also be suitable for those wanting to learn more about the BioImage Archive and gain experience with machine learning approaches for image analysis. The programme will be of particular interest to bioimage analysts with questions relating to the use of ‘big data’ and using the wealth of publically available data curated in the BioImage Archive. The course should be accessible to members of the bioimaging community and does not require prior experience with machine learning methods or use of the BioImage Archive. Applicants are encouraged to explore the resources below before starting their application. Applicants should be comfortable with basic programming tasks and have experience working with Python. Prerequisite reading: BioImage Archive: A call for public archives for biological image data ZeroCostDL4Mic: an open platform to simplify access and use of Deep-Learning in Microscopy The BioStudies database - one stop shop for all data supporting a life sciences study EMPIAR: a public archive for raw electron microscopy image data Image Data Resource: a bioimage data integration and publication platform BioImage Model Zoo 1
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Instructor
- Janick Mathys31
- Wandrille Duchemin31
- Aleena Mushtaq27
- Geert van Geest15
- Michal Szpak15
- Robin Engler15
- Benjamin Moore12
- Emily Perry12
- Tania Wyss Lozano12
- True Colours12
- Wendi Bacon11
- Gustavo Ruiz Buendia10
- Nancy George10
- Birgit Meldal9
- Kalpana Panneerselvam9
- Thuong Van Du Tran9
- Typhaine Paysan-Lafosse9
- Anna Swan8
- David Armstrong8
- Dayane Rodrigues Araujo8
- Louisse Paola Mirabueno8
- Alexandra Holinski7
- Baron Koylass7
- Emily Bowler-Barnett7
- Alexandre Bonvin6
- Andrew Hercules6
- Bruna Piereck6
- David Wishart6
- Markus Müller6
- Nandana Madhusoodanan6
- Rahuman Sheriff6
- Rossana Zaru6
- Sam Holt6
- Sarah Morgan6
- Ugis Sarkans6
- Agnes Uhereczky5
- Eliot Ragueneau5
- Gerard Kleywegt5
- Guillaume Bourque5
- Lauren Erdman5
- Mathieu Bourgey5
- Osman Salih5
- Paul Denny5
- Pedro Raposo5
- Thawfeek Varusai5
- Tom Hancocks5
- William Hsiao5
- Ajay Mishra4
- Alex Bateman4
- Alexander Botzki4
- Alexey Larionov4
- Björn Grüning4
- Bérénice Batut4
- Daniela Brites4
- Dona Shaju4
- Elisabeth Gasteiger4
- Fabio Madeira4
- Finlay Maguire4
- Fiona Brinkman4
- Frédéric Bastian4
- James Collier4
- James Stephenson4
- Jared Simpson4
- Johannes Griss4
- Jonathan Manning4
- Lee Larcombe4
- Lorna Richardson4
- Maira Ihsan4
- Marc Robinson-Rechavi4
- Melissa Davies4
- Nate Coraor4
- Patricia Carvajal Lopez4
- Philippe Le Mercier4
- Piv Gopalasingam4
- Rafael Riudavets Puig4
- Sara Rocio Chuguransky4
- Tatiana Woller4
- Teresa Müller4
- Tobias Rausch4
- Varsha Kale4
- Veronique Voisin4
- Yvonne Lussi4
- Ahmed Hamid Awan3
- Alexey Sokolov3
- Amy LeBlanc3
- Andrew McArthur3
- Anna Syme3
- Anthony Bretaudeau3
- Antonin Thiebaut3
- Anup Kumar3
- Attilio Vittorio Vargiu3
- Aurelien Dugourd3
- Chris Quince3
- Christoph Stritt3
- Clea Siguret3
- Daniela Schneider3
- Dannon Baker3
- David Bujold3
- Deborah Harrus3
- Deepak Tanwar3
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