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Content provider
- European Bioinformatics Institute (EBI)7
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Keyword
- European Variation Archive5
- Ensembl3
- EVA2
- NHGRI-EBI GWAS Catalog2
- UniProt: The Universal Protein Resource2
- API1
- Cross domain (cross-domain)1
- DNA & RNA (dna-rna)1
- Data analysis1
- Ensembl Variant Effect Predictor1
- European Genome-phenome Archive1
- European Mouse Mutation Archive1
- European Nucleotide Archive1
- Genome-Phenome1
- Introduction to bioinformatics1
- Programmatic access1
- Somatic Mutations1
- Variant clusters1
- Variant data1
- Variant data annotation1
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Scientific topic
- DNA variation4
- Genetic variation4
- Genomic variation4
- Mutation4
- Polymorphism4
- Somatic mutations4
- Allele calling1
- Bioinformatics1
- Biological modelling1
- Biological network analysis1
- Biological network modelling1
- Biological network prediction1
- Biological system modelling1
- Data management1
- Data rendering1
- Data visualisation1
- Exome variant detection1
- Genetic variation analysis1
- Genetic variation annotation1
- Genome variant detection1
- Germ line variant calling1
- Metadata management1
- Mutation detection1
- Network analysis1
- Network comparison1
- Network modelling1
- Network prediction1
- Network simulation1
- Network topology simulation1
- Research data management (RDM)1
- Sequence variation analysis1
- Somatic variant calling1
- Systems biology1
- Systems modelling1
- Transcript variant analysis1
- Variant analysis1
- Variant calling1
- Variant filtering1
- Variant mapping1
- de novo mutation detection1
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Event type
- Workshops and courses7
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Target audience
- No prior experience of bioinformatics is required, but an interest in finding out more about genetic variation resources and an undergraduate level understanding of biology would be of benefit. Experience with command line usage would be very beneficial. This workshop will focus specifically on human genetic variation. We encourage the audience to go through our introductory online course on human genetic variation prior to attending the workshop.1
- The course is aimed at PhD students and post-doctoral researchers who are starting to use high-throughput sequencing technologies and bioinformatics methods in their research. The content is most applicable for those working with eukaryotic genomes, especially in the area of human genetics and rare-disease research. Participants will require a basic knowledge of the Unix command line and the Ubuntu 18 operating system. We recommend these free tutorials: Basic introduction to the Unix environment: www.ee.surrey.ac.uk/Teaching/Unix Introduction and exercises for Linux: https://training.linuxfoundation.org/free-linux-training Please note: participants without basic knowledge of these resources will have difficulty in completing the practical sessions.1
- This course is aimed at individuals working across life sciences who have little or no experience in bioinformatics. Applicants are expected to be at an early stage of using bioinformatics in their research with the need to develop their knowledge and skills further. No previous knowledge of programming is required for this course; group projects may give you the opportunity to learn basic programming, but participants will be supported in this by their mentors. Depending on your chosen project, an introductory programming tutorial may be given as homework prior to attending the course.1
- This course is aimed at wet-lab researchers within Latin America (excluding Chile and Uruguay due to funding restrictions) who are working with and/or generating their own crop genomic data or who are working on genotyping technologies, including data analysis software development. Researchers who apply for CABANA courses should have projects in one or more of the CABANA challenge areas (sustainable crop production, communicable diseases, protection of biodiversity). Please note this course will be taught in English, however some trainers are fluent in either Spanish/Portuguese, and can offer language support where feasible. Priority will also be given to those who have not attended a CABANA event yet. Scientists from underrepresented ethnic and gender groups are especially encouraged to apply for this workshop, for example women and those with Black and/or Indigenous heritage. Prerequisites: basic computational or previous bioinformatics experience is required for this workshop, such as basic commands in R. Undergraduate-level knowledge of plant biology would be an advantage. Please note: The course will use genomic data from crop plant species throughout the week. It will not explore in detail methods for assembling genomes.1
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Instructor
- Baron Koylass
- Janick Mathys32
- Wandrille Duchemin32
- Aleena Mushtaq27
- Geert van Geest15
- Michal Szpak15
- Robin Engler15
- Benjamin Moore12
- Emily Perry12
- Tania Wyss Lozano12
- True Colours12
- Wendi Bacon11
- Gustavo Ruiz Buendia10
- Nancy George10
- Birgit Meldal9
- Kalpana Panneerselvam9
- Thuong Van Du Tran9
- Typhaine Paysan-Lafosse9
- Agnes Uhereczky8
- Anna Swan8
- David Armstrong8
- Dayane Rodrigues Araujo8
- Louisse Paola Mirabueno8
- Alexandra Holinski7
- Emily Bowler-Barnett7
- Alexandre Bonvin6
- Andrew Hercules6
- Bruna Piereck6
- David Wishart6
- Markus Müller6
- Nandana Madhusoodanan6
- Rahuman Sheriff6
- Rossana Zaru6
- Sam Holt6
- Sarah Morgan6
- Ugis Sarkans6
- Eliot Ragueneau5
- Gerard Kleywegt5
- Guillaume Bourque5
- James Collier5
- Lauren Erdman5
- Mathieu Bourgey5
- Melissa Davies5
- Osman Salih5
- Paul Denny5
- Pedro Raposo5
- Thawfeek Varusai5
- Tom Hancocks5
- William Hsiao5
- Ajay Mishra4
- Alex Bateman4
- Alexander Botzki4
- Alexey Larionov4
- Björn Grüning4
- Bérénice Batut4
- Daniela Brites4
- Deepak Tanwar4
- Dona Shaju4
- Elisabeth Gasteiger4
- Fabio Madeira4
- Finlay Maguire4
- Fiona Brinkman4
- Frédéric Bastian4
- James Stephenson4
- Jared Simpson4
- Johannes Griss4
- Jonathan Manning4
- Lee Larcombe4
- Lorna Richardson4
- Maira Ihsan4
- Marc Robinson-Rechavi4
- Matheus Lourenço4
- Nate Coraor4
- Patricia Carvajal Lopez4
- Philippe Le Mercier4
- Piv Gopalasingam4
- Rafael Riudavets Puig4
- Sara Rocio Chuguransky4
- Teresa Müller4
- Tobias Rausch4
- Varsha Kale4
- Veronique Voisin4
- Yvonne Lussi4
- Ahmed Hamid Awan3
- Alexey Sokolov3
- Amy LeBlanc3
- Andrew McArthur3
- Anna Syme3
- Anthony Bretaudeau3
- Antonin Thiebaut3
- Anup Kumar3
- Attilio Vittorio Vargiu3
- Aurelien Dugourd3
- Chris Quince3
- Christoph Stritt3
- Clea Siguret3
- Daniela Schneider3
- Dannon Baker3
- David Bujold3
- Deborah Harrus3
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