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Content provider
- European Bioinformatics Institute (EBI)3
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Keyword
- Proteins (proteins)3
- Structures (structures)3
- InterPro2
- Protein Data Bank in Europe2
- ChEMBL: Bioactive data for drug discovery1
- Electron Microscopy Data Bank1
- Electron Microscopy Public Image Archive - EMPIAR1
- InterProScan1
- PDBeFold1
- Protein Data Bank in Europe - Knowledge Base1
- UniProt: The Universal Protein Resource1
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Scientific topic
- Biomolecular structure2
- Computational structural biology2
- Molecular structure2
- Protein structure2
- Protein structures2
- Structural assignment2
- Structural bioinformatics2
- Structural biology2
- Structural determination2
- Structure analysis2
- Structure data resources2
- Structure databases2
- Structure determination2
- Structures2
- Docking simulation1
- Electron density map1
- Gene and protein families1
- Gene families1
- Gene family1
- Gene system1
- Genes, gene family or system1
- Macromolecular docking1
- Molecular docking1
- Protein families1
- Protein sequence classification1
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Event type
- Workshops and courses3
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Country
- United Kingdom2
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Target audience
- This course is aimed at scientists generating structural data or scientists utilising structural data in their analysis and/or interpretation. No previous experience in the field of structural bioinformatics is required, however a basic knowledge of protein structure would be of benefit.1
- This workshop is aimed at bioinformaticians with experience of analysing data from the PDB, either by processing archive files or via API access. We encourage applications from individuals with specific questions relating to PDB data that are difficult to solve using existing data queries. Programming experience is required, with a preference for those familiar with Python, although this is not an absolute requirement. An example use case might involve research into a specific drug molecule, where protein structure is relevant to drug specificity. The graph database would allow the analysis of all common interaction sites in PDB at the residue level, with the potential to expand this search across ligands containing similar fragments. Additional searches could analyse the protein-protein interaction sites between different isoforms of the same protein, and cross-reference them to sequence conservation data and predicted functional annotations. Researchers should submit a 200-word abstract when they apply that describes their work and potential queries related to PDB data. This should include details on how PDB data has been accessed previously and the types of questions trying to be answered.1
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Instructor
- Janick Mathys143
- Bruna Piereck72
- Alexander Botzki68
- Wandrille Duchemin57
- True Colours48
- Christof De Bo45
- Matheus Lourenço42
- Benjamin Pavie38
- Elien Vandermarliere34
- Lieve Ongena34
- Geert van Geest33
- Aleena Mushtaq29
- Robin Engler29
- René Custers23
- Amanda Gonçalves19
- Benjamin Moore18
- Gert Van Isterdael18
- Joris De Wolf18
- Niels Vandamme18
- Agnes Uhereczky17
- David Armstrong17
- Liesbeth De Milde17
- Michal Szpak17
- Nancy George17
- Robin Lefebvre17
- Deepak Tanwar16
- Lucia Smit16
- Birgit Meldal15
- James Collier14
- Kobe Lavaerts14
- Sarah Morgan14
- Tom Hancocks14
- Wendi Bacon14
- Alexandra Holinski13
- Baron Koylass13
- Emily Perry13
- Sebastian Munck13
- Anna Swan12
- Dayane Rodrigues Araujo12
- Sam Holt12
- Tania Wyss Lozano12
- Tatiana Woller12
- David Wishart11
- Kalpana Panneerselvam11
- Lee Larcombe11
- Nicolas Vannieuwkerke11
- Ricard Argelaguet11
- Alex Bateman10
- Alexandre Bonvin10
- Barbara Baert10
- Gustavo Ruiz Buendia10
- Krishna Kumar Tiwari10
- Lorna Richardson10
- Malachi Griffith10
- Niels Geudens10
- Rossana Zaru10
- Veronique Voisin10
- An Staes9
- Bob Asselbergh9
- Frédéric Burdet9
- Gary Bader9
- Jolan Heyse9
- Lennart Martens9
- Lieven Clement9
- Louisse Paola Mirabueno9
- Mathieu Bourgey9
- Obi Griffith9
- Osman Salih9
- Rahuman Sheriff9
- Silvie Fexova9
- Tallulah Andrews9
- Thawfeek Mohamed Varusai9
- Thuong Van Du Tran9
- Typhaine Paysan-Lafosse9
- Ajay Mishra8
- Alexey Larionov8
- Andrew Hercules8
- Bart Mesuere8
- Ben Verhoeven8
- Cath Brooksbank8
- Eliot Ragueneau8
- Evelien Van Hamme8
- Fabio Madeira8
- Frank Vernaillen8
- Geert Vermaerke8
- Hema Bye-A-Jee8
- Jared Simpson8
- Jean-luc Doumont8
- Koen Van den Eeckhout8
- Nicolas Peredo8
- Pavankumar Videm8
- Rachel Marcone8
- Tania Wyss8
- Trevor Pugh8
- Alyona Ivanova7
- Arne Defauw7
- Bart Ghesquière7
- Emily Bowler-Barnett7
- Engy Nasr7
- Gerard Kleywegt7
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