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- European Bioinformatics Institute (EBI)3
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Scientific topic
- Genomics
- Chromosome walking3
- Clone verification3
- DNA-Seq3
- DNase-Seq3
- Exomes3
- Genome annotation3
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- High throughput sequencing3
- High-throughput sequencing3
- NGS3
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- Personal genomics3
- Primer walking3
- Sanger sequencing3
- Sequencing3
- Synthetic genomics3
- Targeted next-generation sequencing panels3
- Viral genomics3
- Whole genomes3
- Biological sequences2
- Functional genomics2
- Metagenomics2
- Sequence analysis2
- Sequence databases2
- Shotgun metagenomics2
- nucleotide2
- Codon usage1
- Comparative transcriptomics1
- DNA chips1
- DNA microarrays1
- Data archival1
- Data archiving1
- Data curation1
- Data curation and archival1
- Data management1
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- Database curation1
- Database hits (sequence)1
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- Gene functional annotation1
- Gene transcription1
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- Nucleic acid sequence alignment analysis1
- Nucleic acid sequence analysis1
- Protein function analysis1
- Protein function prediction1
- Research data archiving1
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- Sequence alignment analysis (nucleic acid)1
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Event type
- Workshops and courses3
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Target audience
- This course is aimed at PhD students and post-doctoral researchers who are using high-throughput sequencing technologies and bioinformatics methods in their research. The content is most applicable for those working with eukaryotic genomes, human genetics and in rare disease research. Participants will require a basic knowledge of the Unix command line, the Ubuntu 16 operating system and the R statistical packages. We recommend these free tutorials: Basic introduction to the Unix environment: www.ee.surrey.ac.uk/Teaching/Unix Introduction and exercises for Linux: https://training.linuxfoundation.org/free-linux-training Basic R concept tutorials: www.r-tutor.com/r-introduction Please note: participants without basic knowledge of these resources will have difficulty in completing the practical sessions.1
- This course is aimed at PhD students and postdoctoral researchers needing to learn about methods and approaches for manipulating and analysing livestock genomic data. It will help those wanting to start basic identification of genetic variation, annotating function to genomic data, and using public data to interpret new findings. Participants will require a basic knowledge of the Unix command line, the Ubuntu 18 operating system and the R statistical packages. We recommend these free tutorials: Basic introduction to the Unix environment: www.ee.surrey.ac.uk/Teaching/Unix Introduction and exercises for Linux: https://training.linuxfoundation.org/free-linux-training Basic R concept tutorials: www.r-tutor.com/r-introduction Regardless of your current knowledge we encourage successful participants to use these, and other materials, to prepare for attending the course and future work in this area. 1
- This course is intended for PhD students of Portuguese and international institutions (with a particular focus on students of the CIBIO-InBIO’s BIODIV, SUSFOR Doctoral Programs and University of Porto), but more experienced researchers that are initiating projects in the field of environmental metagenomics can also participate. Prerequisite knowledge No previous bioinformatics experience is required, but an undergraduate level understanding of biology would be an advantage.1
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Instructor
- Sam Holt
- Alexey Larionov6
- Francesco Iorio5
- Tobias Rausch5
- Ajay Mishra4
- Mathieu Bourgey4
- Christoph Stritt3
- Daniela Brites3
- Erin Haskell3
- Moritz Gerstung3
- Andrea Cabibbe2
- Arash Ghodousi2
- Astrid Gall2
- Baron Koylass2
- Benjamin Moore2
- Bethlehem Adnew2
- Birgit Meldal2
- Carla Valeria Filippi2
- David Armstrong2
- Diana Lopez2
- Federico DiMarco2
- Liliana Rutaihwa2
- Linzy Elton2
- Manuel Humberto Reyes-Valdes2
- Octavio Martinez de la Vega2
- Peter van Heusden2
- Robert Eveleigh2
- Silvie Fexova2
- Wendi Bacon2
- Adnan Malik1
- Alan Archibald1
- Aleena Mushtaq1
- Alex Mitchell1
- Ana Cvejic1
- Aurélie Ernst1
- Benilton Carvalho1
- Bilal El Houdaigui1
- Bruno Contreras-Moreira1
- Cath Brooksbank1
- Cei Abreu Goodger1
- Charles Solomon1
- Chiara Batini1
- Daniel Macqueen1
- Daniel Poppleton1
- Dave Edwards1
- David Urbina1
- Deborah Harrus1
- Emily Perry1
- Faye Rodgers1
- Francesc Muyas Remolar1
- Francisco Lobo1
- Galo A. Goig1
- Gareth Gillard1
- Garth Ilsley1
- Ilias Lavidas1
- Isidro Cortes Ciriano1
- Isidro Cortes-Ciriano1
- Jan Kreuze1
- Jane Loveland1
- Jorge Batista da Rocha1
- Juan Pablo Nani1
- Kalpana Paneerselvam1
- Keeva Cochrane1
- Kostas Billis1
- Lars Grønvold1
- Louisse Mirabueno1
- Malcolm Perry1
- Manuel More1
- Marco Cristancho1
- Matthew Young1
- Mauricio Montero1
- Nancy George1
- Natalia Barboza1
- Natalia Pin Viso1
- Pamela Victoria Villalba1
- Peter Causey-Freeman1
- Piraveen Gopalasingam1
- Pooran Dewari1
- Rafael Penha Filho1
- Ricardo Alcalá Briseño1
- Ricardo Chinchilla1
- Rossana Zaru1
- Sean Laidlaw1
- Segundo Fuentes1
- Simone Zaccaria1
- Thawfeek Varusai1
- Thibaut Hourlier1
- Thomas Juettemann1
- Tom Hancocks1
- Ugis Sarkans1
- Veronica Busa1
- Walter Barrantes1
- Wendy Acuna1
- Wojtek Bazant1
- Yuanhua Huang1
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