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Keyword
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Scientific topic
- Bioinformatics75
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- Protein bioinformatics24
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Operation
- Data handling25
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- Data brokering17
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- Data analysis6
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- Allele calling2
- Data formatting2
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- Exome variant detection2
- File format conversion2
- File formatting2
- File reformatting2
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- Genome variant detection2
- Germ line variant calling2
- Molecular dynamics2
- Molecular dynamics simulation2
- Mutation detection2
- Optimisation and refinement2
- Protein dynamics2
- Somatic variant calling2
- Structure analysis2
- Variant calling2
- Variant mapping2
- de novo mutation detection2
- Attribute selection1
- Binding site prediction1
- Biological pathway analysis1
- Biological pathway modelling1
- Biological pathway prediction1
- CG analysis1
- Chemical class enrichment1
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- Contact map prediction1
- Data filtering1
- Expectation maximisation1
- Feature extraction1
- Feature projection1
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- File format validation1
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- Functional clustering1
- Functional pathway analysis1
- Functional sequence clustering1
- Gibbs sampling1
- Hydrogen bond calculation1
- Hypothesis testing1
- Ligand-binding site detection1
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- MD analysis1
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- Omnibus test1
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- Peptide-protein binding prediction1
- Protein Dynamics Analysis1
- Protein binding site detection1
- Protein binding site prediction1
- Protein contact map prediction1
- Protein design1
- Protein flexibility and motion analysis1
- Protein flexibility prediction1
- Protein folding pathway prediction1
- Protein motion prediction1
- Protein property calculation1
- Protein property calculation (from sequence)1
- Protein property calculation (from structure)1
- Protein property rendering1
- Protein redesign1
- Protein secondary structure visualisation1
- Protein structural property calculation1
- Protein structure prediction1
- RNA secondary structure visualisation1
- Rational protein design1
- Residue contact prediction1
- Residue interaction calculation1
- Residue interaction prediction1
- Sequence filtering1
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Tool
- Data Stewardship Wizard21
- European Nucleotide Archive (ENA)8
- RDMkit7
- Ontology Lookup Service6
- AlphaFold 24
- AutoDock Vina4
- SPCI4
- PyMOL3
- FAIRDOM-SEEK2
- Gromacs2
- WorkflowHub2
- ANASTASIA1
- AlphaCharges1
- AlphaFill1
- AlphaFind1
- BioSamples1
- BioTranslator1
- CAVER1
- CAVER Web1
- CalFitter1
- CaverDock1
- ChEMBL1
- DECIPHER1
- EGA1
- Ensembl1
- EnzymeMiner1
- FireProt1
- FireProt 2.01
- FireProt ASR1
- FireProtDB1
- HADDOCK web portal1
- HotSpot Wizard1
- LoopGrafter1
- Metabolic Atlas1
- Open PHACTS API1
- Open Targets1
- PDBe1
- PDBe-KB1
- Snakemake1
- SoluProt1
- SoluProtMutsupDB1
- Tamarind1
- TmAlphaFold database1
- edgeR1
- pyCaverDock1
- tidybulk1
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Venue
- , 291
- online17
- European Bioinformatics Institute, Hinxton14
- United Kingdom13
- Online12
- SIB10
- EBI, Wellcome Genome Campus8
- EMBL-EBI, Wellcome Genome Campus7
- Zoom4
- Ghent - VIB/UGent FSVM II, Technologiepark 753
- Microsoft Teams3
- , Wellcome Genome Campus2
- Earlham Institute (EI), Colney Lane2
- Frankfurt am Main2
- Manchester Cell-Matrix Centre2
- Pam Liversidge Building, Design Studio 1 - D06, or ONLINE2
- University of Cambridge, Downing Street2
- University of Sheffield, or ONLINE2
- 17. listopadu 1192/12, 12 17. listopadu1
- 17. listopadu, 17. listopadu1
- Aalto campus - Otakaari 1, lecture room U9 (2nd floor) / limited online participation 1
- Australia1
- BMC Trippelrummet Husargatan 3, entrance C111
- Barber House Boardroom (PROVISIONAL) or ONLINE1
- Bartolome House Seminar Room EG03, or ONLINE1
- Bartolome House, Seminar Room EG03, University of Sheffield, or ONLINE1
- Bartolome House, Seminar Room EG03, or ONLINE1
- Berlin1
- Bhupat and Jyoti Mehta School of Biosciences, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras1
- Bielefeld University, 25 Universitätsstraße N7-114, UHG1
- Center of Data and Knowledge Integration for Health - CIDACS, Instituto Gonçalo Moniz (IGM), technical-scientific unit (FIOCRUZ), R. Mundo 121, Ed. Tecnocentro, Trobogy1
- Cripps Court Magdalene College, 1-3 Chesterton Road1
- Delivered online virtually, with face-to-face sessions on Teams.1
- EMBL-EBI, EMBL EBI1
- EMBL-EBI, Wellcome genome campus1
- Erasmus Medical Center, Dr. Molewaterplein 401
- Espoo1
- European Bioinformatics Institute1
- Faculty of Pharmacy, University of Porto1
- Faculty of Science, Palacky University Olomouc, 17. listopadu 1192/121
- Freiburg im Breisgau1
- Heidelberg1
- INESC, 9 Rua Alves Redol1
- Instituto de Medicina Molecular (IMM), Avenida Professor Egas Moniz1
- Italy1
- Kamenice 5 625 00 Brno-Bohunice Česko1
- Kassel1
- Keilaranta 14 / Online1
- Korinth1
- Köln1
- L69 7ZX1
- Life Science Center, Keilaranta 14 / Online1
- Narva mnt 18, room 20211
- On Line - ZOOM1
- On Line - ZOOM platform1
- On line - via ZOOM1
- On line event1
- Online / CSC - Keilaranta 141
- Online via Zoom1
- Palacky University Olomouc (UPOL) Faculty of Science tř. 17. listopadu 12, Olomouc 77900, Czech Republic rooms 3.002 (tutorials/challenge), 3.003 (lectures)1
- Rom1
- Room 401.401, The Faculty of Engineering (Building 401) 20 Symonds Street, Auckland Central1
- Saarbrücken1
- TF fløy III, 1430 Kajaveien1
- The Open University - Online1
- USP / FIOCRUZ Amazonas, Rua Terezina, 476 - Adrianópolis1
- University of Costa Rica (UCR), Ciudad universitaria Rodrigo Facio Brenes1
- University of Liverpool, Brownlow Hill1
- University of Ljubljana, Faculty of Medicine1
- Uppsala University, SciLifeLab, BMC, Husargatan 3, Uppsala1
- Via Principessa Margherita, 461
- Virtual (Slack)1
- Wyndham Garden Berlin Mitte, 116A Osloer Straße1
- děkanát Přírodovědecká fakulta Univerzity Palackého 17. listopadu 1192/121
- on site, The trainer will come to your lab1
- online, with satellite events in some locations, for example CSC - IT Center for Science in Espoo, Finland.1
- register for online participation: https://attendee.gotowebinar.com/register/14291236370652551811
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City
- Streamed139
- Online88
- Liverpool10
- Sheffield, or online7
- Berlin6
- online6
- Espoo5
- Bologna4
- Heidelberg4
- Nicosia4
- Manchester3
- Olomouc3
- Zwijnaarde3
- Frankfurt am Main2
- Lisboa2
- Olomouc 92
- Tartu2
- Uppsala2
- Auckland1
- Ayia Napa 1
- Barcelona1
- Bielefeld1
- Brno1
- Cambridge1
- Coimbra1
- Deciphering the epigenetic landscape of the brain: Innovations in chromatin profiling with single-cell nano-CUT&Tag. Marek Bartosovic https://youtu.be/opdcnqf63TA1
- Freiburg im Breisgau1
- Guelph1
- Göttingen1
- Halle Saale1
- How does epigenetic mechanism impact Type 2 diabetes? Charlotte Ling https://youtu.be/c0yk3rb7Jdg1
- Italy1
- Kassel1
- Korinth1
- Köln1
- Leiden1
- Leuven/Ghent1
- Ljubljana1
- Lund1
- Milton Keynes1
- Multiomics Data Integration - A Translational Research Perspective. Animesh Acharjee https://youtu.be/TIdR1NQsT3o1
- Norwich1
- Porto1
- Procida1
- Rom1
- Rotterdam1
- Saarbrücken1
- Sheffield1
- Transposon Genomics — From Single Loci To Single Cells. Gale Hammell https://youtu.be/W1Osga9fBV81
- Zoom1
- n/a- online1
- online via Zoom1
- virtual1
- Ås1
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Sponsor
- NERC27
- ELIXIR Europe20
- German Network for Bioinformatics Infrastructure Service, Training, Cooperations & Cloud Computing16
- Australian BioCommons15
- Centre for Digital Life Norway13
- Melbourne Bioinformatics12
- The University of Melbourne12
- University of Freiburg12
- ELIXIR Belgium11
- ABRomics7
- Erasmus Medical Center7
- Institut Français de Bioinformatique7
- Avans Hogeschool6
- The Pennsylvania State University6
- ELIXIR CZ5
- ELIXIR Converge5
- ELIXIR Norway5
- NanoCommons5
- This course is funded as part of the UKRI Innovation Scholars. Data Science Training in Health and Bioscience call (DaSH). (MR/V038966/1)5
- EU H20204
- H3ABioNet4
- 101100604 - DIGITAL-2022-TRAINING-023
- Co-funded by the European Commission3
- ELIXIR3
- ELIXIR-CONVERGE3
- Ministry of Science, Research and Arts3
- NanoSolveIT3
- Palacký University Olomouc3
- Pôle National de Données de Biodiversité3
- RDA-Portugal3
- SciComm Academy3
- de.NBI3
- AIBIO-UK2
- Aurora Alliance2
- BioMedData2
- EOSC | FAIR2Adapt2
- EU H2020 NanoCommons2
- Funded by the European Union2
- German Competence Center Cloud Technologies for Data Management and Processing2
- IRCCS Ospedale San Raffaele2
- LINQ management GmbH2
- Muséum national d'Histoire naturelle2
- Pan-Africa network for genomic surveillance of poverty related diseases and emerging pathogens2
- Pan-African Consortium for the Evaluation of Antituberculosis Antibiotics2
- Research Council of Norway2
- South African National Bioinformatics Institute, University of the Western Cape2
- Swiss Tropical and Public Health Institute2
- The Carpentries2
- The European & Developing Countries Clinical Trials Partnership2
- The European Union2
- The Foundation for Innovative New Diagnostics2
- Università Vita-Salute San Raffaele2
- Aurora1
- Austrian Science Fund grant W012131
- COST Associaion1
- COST Association1
- CSUC1
- Center for Experimental and Clinical Imaging Technologies Zurich (EXCITE Zurich)1
- DATA TERRA1
- EASI-genomics1
- ELIXIR 1
- ELIXIR Bioinformatics Industry Forum1
- ELIXIR Slovenia1
- ELIXIR Training Platform1
- ELIXIR-CZ1
- ELIXIR-DATAREX1
- ELIXIR-SE1
- ELIXIR-STEERS1
- EOSC OSCARS1
- ERASMUS+1
- Enantis1
- European Union1
- FEUGA1
- Flanders BioImaging1
- Gallantries: Bridging Training Communities in Life Science, Environment and Health1
- Genetics Society of AustralAsia1
- Germano de Sousa1
- HPC Carpentry1
- Impact evaluation at Node-level - getting it done” Commissioned service from ELIXIR1
- Libra1
- Loschmidt Laboratories1
- NFDI4BioImage1
- NanoRigo1
- Nanocommons1
- NeIC1
- Nordic e-Infrastructure Collaboration (NeIC)1
- Novogene1
- OLISSIPO1
- PHENET1
- Palacky University Olomouc1
- RiskGone1
- SGS1
- SciLifeLab1
- SciLifeLab/KAW DDLS programme1
- Seqera1
- Trond Mohn Research Foundation1
- VEIS1
- de.KCD1
- https://nanorigo.eu/1
- nanocommons1
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Target audience
- Researchers65
- PhD students42
- Graduate students21
- Life Science Researchers21
- Industry16
- Academics15
- Master students15
- Post Docs13
- mixed audience13
- All postgraduates12
- PhD11
- PhD candidate11
- Students9
- Beginner8
- Professors8
- Wet-lab researchers and bioinformaticians8
- bioinformaticians8
- Life Scientists7
- PhD Students7
- PI6
- Senior scientist/ Principal investigator6
- Technicians6
- data steward / data manager6
- Biologists5
- Life sciences5
- PIsSenior scientist/ Principal investigator5
- PhD candidates5
- Undergraduate students5
- data stewards5
- Anyone intersted in GWAS and using the H3Africa genotyping chip4
- Bioinformatician4
- Bioinformaticians and wet-lab biologists who can program in Perl, Python or R.4
- Masters students4
- Molecular Biologists4
- PhD student4
- Researcher4
- Researcher in life sciences4
- post-docs4
- postdoctoral researchers4
- Academic3
- Bioinformaticians3
- Bioinformaticians and wet-lab biologists who can program in Python or R.3
- Clinicians3
- Data managers3
- Early Career Researchers (ECRs)3
- Government3
- Graduate Students3
- Job seeker3
- Post-Docs3
- Research presentation3
- Scientists3
- Small and Medium-sized Enterprises (SMEs)3
- Student3
- Trainers3
- data manager3
- data managers3
- life scientists3
- project manager3
- reproducible research3
- Beginners2
- Biologists, Genomicists, Computer Scientists2
- Data Scientists2
- Early Career Researcher2
- Early career investigators2
- Evolutionary Biologists2
- Expert Support2
- Industry professionals, and people with a keen interest in the subject.2
- Intermediate2
- Pathologists2
- Plant research2
- Post docs2
- PostDoc2
- PostDocs2
- Statistician2
- This course is aimed at advanced PhD students and post-doctoral researchers who are applying or planning to apply high throughput sequencing technologies in cancer research and wish to familiarise themselves with bioinformatics tools and data analysis methodologies specific to cancer data. Familiarity with the technology and biological use cases of high throughput sequencing is required, as is some experience with R/Bioconductor (basic understanding of the R syntax and ability to manipulate R objects) and the Unix/Linux operating system.2
- This course is aimed at individuals working across life sciences who have little or no experience in bioinformatics. Applicants are expected to be at an early stage of using bioinformatics in their research with the need to develop their knowledge and skills further. No previous knowledge of programming is required for this course; group projects may give you the opportunity to learn basic programming, but participants will be supported in this by their mentors. Depending on your chosen project, an introductory programming tutorial may be given as homework prior to attending the course.2
- This workshop is aimed at new and experienced managers of bioinformatics core facilities, or other facilities that support their users to analyse and interpret large biomolecular data sets. This course will not provide a platform for teaching hands-on bioinformatics analysis.2
- Training Designers2
- Training instructors2
- Young researchers, Members of the Italian Society of Biochemistry and Molecular Biology (SIB)2
- beginner bioinformaticians2
- modellers for nanosafety prediction2
- policy officer2
- research software engineers and research data managers working with ELIXIR-supported tools and resources2
- researchers2
- software engineers2
- PhD students1
- rare disease patients representatives1
- Analysts1
- Anyone interested1
- Anyone interested in learning about metabolomics1
- Anyone who wants to learn more about GWAS1
- Applicants must be employed within Latin America only. A relevant undergraduate-level degree in a biology or computer science / informatics degree would be helpful. You may have an MSc/PhD in biology, computer science and/or bioinformatics, or relevant experience through employment. Please note this course will be taught in English, however some trainers are fluent in either Spanish/Portuguese, and can offer language support where feasible. Priority will also be given to those who have not attended a CABANA event yet. You may be expected to watch pre-recorded videos and complete short assignments prior to attending the workshop. This should amount to up to 5 hours of work. 1
- Beginners who have very little background in using the command line and are enthusiastic to learn more1
- Bench biologists1
- Bioinformaticians and Biologists who want to learn how to manipulate, process data, and make plots using R1
- Bioinformaticians and wet-lab biologists1
- Bioinformaticians and wet-lab biologists who can program in Perl.1
- Bioinformaticians, Biologists1
- Biological sciences research students and postdocs who may want to use HPC in their research.Please note that Biochemistry first year graduate students book this course via their Moodle site not here.1
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Language
- English435
- Czech1
- Italian1
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Collection
- ELIXIR Biodiversity Community23
- PHENotyping and EnviroTyping (PHENET training collection)7
- HemaFAIR Training: Applying FAIR Principles in Hematology Research5
- ELIXIR Systems Biology Community: training events and materials3
- Single-cell Omics Community - collection of courses and materials1
- VEIS - Value of the EGA for Industry and Society1
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Instructor
- Janick Mathys31
- Wandrille Duchemin31
- Aleena Mushtaq27
- Geert van Geest15
- Michal Szpak15
- Robin Engler15
- Benjamin Moore12
- Emily Perry12
- Tania Wyss Lozano12
- True Colours12
- Wendi Bacon11
- Gustavo Ruiz Buendia10
- Nancy George10
- Birgit Meldal9
- Kalpana Panneerselvam9
- Thuong Van Du Tran9
- Typhaine Paysan-Lafosse9
- Anna Swan8
- David Armstrong8
- Dayane Rodrigues Araujo8
- Louisse Paola Mirabueno8
- Alexandra Holinski7
- Baron Koylass7
- Emily Bowler-Barnett7
- Alexandre Bonvin6
- Andrew Hercules6
- Bruna Piereck6
- David Wishart6
- Markus Müller6
- Nandana Madhusoodanan6
- Rahuman Sheriff6
- Rossana Zaru6
- Sam Holt6
- Sarah Morgan6
- Ugis Sarkans6
- Agnes Uhereczky5
- Eliot Ragueneau5
- Gerard Kleywegt5
- Guillaume Bourque5
- Lauren Erdman5
- Mathieu Bourgey5
- Osman Salih5
- Paul Denny5
- Pedro Raposo5
- Thawfeek Varusai5
- Tom Hancocks5
- William Hsiao5
- Ajay Mishra4
- Alex Bateman4
- Alexander Botzki4
- Alexey Larionov4
- Björn Grüning4
- Bérénice Batut4
- Daniela Brites4
- Dona Shaju4
- Elisabeth Gasteiger4
- Fabio Madeira4
- Finlay Maguire4
- Fiona Brinkman4
- Frédéric Bastian4
- James Collier4
- James Stephenson4
- Jared Simpson4
- Johannes Griss4
- Jonathan Manning4
- Lee Larcombe4
- Lorna Richardson4
- Maira Ihsan4
- Marc Robinson-Rechavi4
- Melissa Davies4
- Nate Coraor4
- Patricia Carvajal Lopez4
- Philippe Le Mercier4
- Piv Gopalasingam4
- Rafael Riudavets Puig4
- Sara Rocio Chuguransky4
- Tatiana Woller4
- Teresa Müller4
- Tobias Rausch4
- Varsha Kale4
- Veronique Voisin4
- Yvonne Lussi4
- Ahmed Hamid Awan3
- Alexey Sokolov3
- Amy LeBlanc3
- Andrew McArthur3
- Anna Syme3
- Anthony Bretaudeau3
- Antonin Thiebaut3
- Anup Kumar3
- Attilio Vittorio Vargiu3
- Aurelien Dugourd3
- Chris Quince3
- Christoph Stritt3
- Clea Siguret3
- Daniela Schneider3
- Dannon Baker3
- David Bujold3
- Deborah Harrus3
- Deepak Tanwar3
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