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Content provider
- Australian BioCommons9
- European Bioinformatics Institute (EBI)8
- BioExcel4
- Centre for Digital Life Norway1
- INB: Spanish National Bioinformatics Institute1
- de.NBI1
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Keyword
- Workflows11
- Nextflow8
- nf-core4
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- Gene expression (gene-expression)2
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- GWAS workflow1
- Gene Expression1
- Genotyping array analysis 1
- Globus1
- H3ABioNet1
- H3ABioNet GWAS 2018 Lecture Series1
- H3Africa genotyping array1
- High performance computing1
- Job dispatcher1
- Jupyter notebook1
- KNIME1
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- MGnify1
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- Open Science1
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- pipeline development1
- workflUX1
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Scientific topic
- Pipelines
- Bioinformatics76
- Data management70
- Metadata management70
- Research data management (RDM)70
- Genome annotation45
- Exomes42
- Genomes42
- Genomics42
- Personal genomics42
- Synthetic genomics42
- Viral genomics42
- Whole genomes42
- Active learning30
- Data archival30
- Data archiving30
- Data curation30
- Data curation and archival30
- Data preservation30
- Database curation30
- Ensembl learning30
- Kernel methods30
- Knowledge representation30
- Machine learning30
- Neural networks30
- Recommender system30
- Reinforcement learning30
- Research data archiving30
- Supervised learning30
- Unsupervised learning30
- Biomathematics27
- Computational biology27
- Mathematical biology27
- Protein structure27
- Theoretical biology27
- FAIR data26
- Findable, accessible, interoperable, reusable data26
- Protein function analysis26
- Protein function prediction26
- Protein bioinformatics25
- Protein databases25
- Protein informatics25
- Proteins25
- Software integration25
- Tool integration25
- Tool interoperability25
- Workflows25
- Antimicrobial stewardship24
- Medical microbiology24
- Microbial genetics24
- Microbial physiology24
- Microbial surveillance24
- Microbiological surveillance24
- Microbiology24
- Molecular infection biology24
- Molecular microbiology24
- RNA-Seq analysis24
- Comparative transcriptomics22
- Protein structures22
- Transcriptome22
- Transcriptomics22
- Molecular diagnostics19
- Personalised medicine19
- Precision medicine19
- Community analysis18
- Environmental microbiology18
- Function analysis18
- Functional analysis18
- Microbial ecology18
- Microbiome18
- Molecular community analysis18
- DNA variation17
- Genetic variation17
- Genomic variation17
- Mutation17
- Polymorphism17
- Somatic mutations17
- Structure analysis17
- Data visualisation16
- MicroRNA sequencing16
- RNA sequencing16
- RNA-Seq16
- Small RNA sequencing16
- Small RNA-Seq16
- Small-Seq16
- Transcriptome profiling16
- WTSS16
- Whole transcriptome shotgun sequencing16
- miRNA-seq16
- Bioimaging15
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- Exometabolomics15
- LC-MS-based metabolomics15
- MS-based metabolomics15
- MS-based targeted metabolomics15
- MS-based untargeted metabolomics15
- Mass spectrometry-based metabolomics15
- Metabolites15
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Operation
- Allele calling1
- Biological pathway analysis1
- Biological pathway modelling1
- Biological pathway prediction1
- Data analysis1
- Exome variant detection1
- Functional clustering1
- Functional pathway analysis1
- Functional sequence clustering1
- Genome variant detection1
- Germ line variant calling1
- Mutation detection1
- Optimisation and refinement1
- Pathway analysis1
- Pathway comparison1
- Pathway modelling1
- Pathway prediction1
- Pathway simulation1
- Somatic variant calling1
- Variant calling1
- Variant mapping1
- de novo mutation detection1
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Tool
- Gromacs2
- WorkflowHub2
- HADDOCK web portal1
- Open PHACTS API1
- Snakemake1
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Event type
- Workshops and courses24
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Venue
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- European Bioinformatics Institute, Hinxton1
- Virtual (Slack)1
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Country
- Australia2
- Norway1
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Sponsor
- EASI-genomics1
- ELIXIR1
- EOSC OSCARS1
- European Union1
- H3ABioNet1
- Research Council of Norway1
- Trond Mohn Research Foundation1
- de.NBI1
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Target audience
- bioinformaticians3
- Anyone intersted in GWAS and using the H3Africa genotyping chip1
- Anyone who wants to learn more about GWAS1
- Beginners1
- Cloud users1
- Galaxy users1
- HPC users1
- Intermediate1
- PhD students1
- The workshop is designed for anyone who is creating workflows, either via platforms like Galaxy Australia, or via the command line.1
- post-docs1
- software engineers1
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Eligibility
- Registration of interest7
- First come first served6
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Language
- English2
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Node
- EMBL-EBI8
- United Kingdom4
- Spain2
- Germany1
- Greece1
- Netherlands1
- Norway1
- Sweden1
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Instructor
- Andrew Stubbs1
- Anil Shantilal Thanki1
- Graeme Tyson1
- Iguaracy Pinheiro de Sousa1
- Irene Papatheodorou1
- Iris Diana Yu1
- Jesse Harrison1
- Julia Jakiela1
- Marisa Loach1
- Mehmet Tekman1
- Nancy George1
- Wendi Bacon1
- Zhichao Miao1
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