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- European Bioinformatics Institute (EBI)3
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- Workshops and courses3
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- Brazil1
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Target audience
- This course is aimed at wet-lab researchers at any career stage within Latin America undertaking pathogen population genetics and surveillance, interested in applying next generation sequencing to virus identification. Those working in plant protection organizations and/or academia are welcome to apply, and priority will be given to those who have not yet attended a CABANA workshop. Please note this course will be taught in English, however the trainers are fluent in Spanish, and can offer language support where feasible. A number of travel fellowships are available for this course - early-stage researchers and researchers from underrepresented groups are especially encouraged to apply for CABANA travel fellowships. You can apply for travel fellowships via the course application form. Priority will be given to those who have not previously been awarded a CABANA fellowship. Knowledge in R and NGS technologies is required. Therefore, these free resources should be studied beforehand: Basic R concept tutorials: www.r-tutor.com/r-introduction https://r4ds.had.co.nz/tidy-data.html Learning outcomes1
- This course is intended for graduate students, postdocs and young researchers working in the fields of metagenomics and viral discovery in the CABANA grand challenge areas of communicable diseases, protection of biodiversity, and/or sustainable crop production. Applicants must be employed within Latin America only. Additional we cannot accept applications from Chile or Uruguay due to funding restrictions. Prerequisites Please note this course will be taught in English, however the trainers are fluent in either Spanish/Portuguese, and can offer language support where feasible. Priority will also be given to those who have not attended a CABANA event yet. Students should be familiar with using the Linux command line. As the course will be held remotely, all students must have Zoom previously installed on their computers. Also, as classes will be held synchronously, a good Internet connection is mandatory. A knowledge of virology, especially from previous research experience, is also desirable. Scientists from underrepresented ethnic and gender groups are especially encouraged to apply for this workshop, for example women and those with Black and/or Indigenous heritage. 1
- This course is suitable for postgraduate (MSc-level and above) scientists within Latin America (excluding Chile and Uruguay) who are working with or generating genomic datasets related to SARS-CoV-2. Ideally, trainees will be working in the field of virology, and performing sequencing and/or analysing viral sequences, especially those within the coronaviridae family. We welcome applications from universities, research centres, hospitals, public health, and private laboratories. Scientists from underrepresented ethnic and gender groups are especially encouraged to apply for this workshop. Please note this course will be taught in English, however the trainers are fluent in either Spanish or Portuguese and can offer language support where feasible. Attendance priority will be given to those who have not attended a CABANA event yet. Prerequisites Undergraduate-level knowledge of biology would be advantageous. You will also require access to a computer for the duration of the workshop. While most practicals are browser-based, a few will require a UNIX environment. Trainees will therefore require a basic knowledge of the Unix command line. We recommend these free tutorials: Basic introduction to the Unix environment: www.ee.surrey.ac.uk/Teaching/Unix Introduction and exercises for Linux: https://training.linuxfoundation.org/free-linux-training Training will be delivered via Zoom; trainees need to ensure they have working audio and microphones.1
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Instructor
- Jan Kreuze2
- Segundo Fuentes2
- Agustin Pardo1
- Antonio Marinho da Silva Neto1
- Arthur Gruber1
- Claudio Schuster1
- Dario Fernández Do Porto1
- Diego Forero1
- Felipe Naveca1
- Gilderlanio Santana de Araujo1
- Gisele Nunes Lopes1
- Guillermo Rangel-Pineros1
- Liliane S. Oliveira Kashiwabara1
- Marco Cristancho1
- Mauricio Montero1
- Nadim Mahdi Rahman1
- Natalia Barboza1
- Piv Gopalasingam1
- Priscila Born1
- Renato Oliveira1
- Ricardo Alcalá Briseño1
- Ricardo Chinchilla1
- Robson Francisco de Souza1
- Tulio de Lima Campos1
- Valentina Gallo1
- Walter Barrantes1
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