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Content provider
- SIB Swiss Institute of Bioinformatics270
- ELIXIR Slovenia10
- ELIXIR Estonia9
- BioData.pt6
- ELIXIR: The Czech Republic Node6
- ELIXIR-SI eLearning Platform (EeLP)4
- Centre for Digital Life Norway3
- Galaxy Project3
- Birmingham Metabolomics Training Centre2
- Data Carpentry2
- ELIXIR Portugal2
- European Bioinformatics Institute (EBI)2
- VIB Conferences2
- de.NBI2
- Barcelona Supercomputing Center (BSC)1
- BioExcel1
- ELIXIR1
- ELIXIR Luxembourg1
- ELIXIR Norway1
- IFB French Institute of Bioinformatics1
- INB: Spanish National Bioinformatics Institute1
- Jalview1
- NBIS1
- NORBIS, the Norwegian national research school in bioinformatics, biostatistics and systems biology1
- Software Carpentry1
- University of Cambridge Bioinformatics Training1
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Keyword
- training24
- EeLP16
- eLearning16
- Data management plan9
- bioinformatics9
- life sciences8
- DMP7
- Computer science6
- experimental biology6
- functional genomics6
- genes and genomes6
- transcriptomics6
- Data analysis5
- genomics5
- molecular modelling5
- next generation sequencing5
- Bioinformatics4
- Genomics4
- QSAR4
- Reproducibility4
- Statistics4
- biochemistry4
- data management4
- high-performance computing4
- in silico drug design4
- mauro delorenzi & frédéric schütz group4
- molecular docking4
- pharmacophore4
- reproducibility4
- Assembly3
- Data managment plan3
- Population Genomics3
- Training3
- biomarkers3
- biostatistics3
- data sharing3
- machine learning3
- open data3
- population genomics3
- proteins and proteomes3
- proteomics3
- single-cell biology3
- R-programming2
- BIoinformatics2
- BioExcel2
- Biostatistics2
- Chemical biology (chemical-biology)2
- DMP tools2
- Data Visualization2
- Data carpentry2
- Data storage2
- Data visualisation2
- Data visualization2
- GWAS2
- Galaxy2
- Genetic Diversity2
- Git2
- HDRUK2
- Metabolomics2
- NGS bioinformatics2
- NeLS2
- Nextflow2
- OpenRefine2
- PDBe2
- Python2
- R2
- RStudio2
- Single Cell technologies2
- SoftwareCarpentry2
- antibodies2
- assembly2
- basic research2
- data analysis2
- data cleaning2
- data mining2
- data publication2
- data security2
- data visualisation2
- drug discovery2
- frédérique lisacek group2
- genetic clustering2
- glycomics2
- mark ibberson group2
- mass spectrometry2
- microbiology2
- protein interactions2
- rémy bruggmann group2
- services and resources2
- structural biology2
- virtual screening2
- RNA-Seq1
- #training1
- API1
- ATAC-seq1
- Ab initio models1
- Artificial Intelligence1
- Autodock Vina1
- Bayesian inference1
- BioBB1
- Bioconductor1
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Scientific topic
- Data management18
- Metadata management18
- Research data management (RDM)18
- Bioinformatics16
- Cloud computing11
- Computer science11
- Exomes11
- Genome annotation11
- Genomes11
- Genomics11
- HPC11
- High performance computing11
- High-performance computing11
- Personal genomics11
- Synthetic genomics11
- Viral genomics11
- Whole genomes11
- Bayesian methods4
- Biological sequences4
- Biostatistics4
- Chromosome walking4
- Clone verification4
- DNA-Seq4
- DNase-Seq4
- Descriptive statistics4
- Gaussian processes4
- High throughput sequencing4
- High-throughput sequencing4
- Inferential statistics4
- Markov processes4
- Multivariate statistics4
- NGS4
- NGS data analysis4
- Next gen sequencing4
- Next generation sequencing4
- Panels4
- Primer walking4
- Probabilistic graphical model4
- Probability4
- Sanger sequencing4
- Sequence analysis4
- Sequence databases4
- Sequencing4
- Statistics4
- Statistics and probability4
- Targeted next-generation sequencing panels4
- Data rendering3
- Data visualisation3
- Population genomics3
- Active learning2
- Bottom-up proteomics2
- Comparative modelling2
- Data archival2
- Data archiving2
- Data clean-up2
- Data cleaning2
- Data curation2
- Data curation and archival2
- Data integrity2
- Data preservation2
- Data privacy2
- Data quality2
- Data quality management2
- Data security2
- Database curation2
- Discovery proteomics2
- Docking2
- Drug discovery2
- Ensembl learning2
- Exometabolomics2
- Homology modeling2
- Homology modelling2
- Kernel methods2
- Knowledge representation2
- LC-MS-based metabolomics2
- MS-based metabolomics2
- MS-based targeted metabolomics2
- MS-based targeted proteomics2
- MS-based untargeted metabolomics2
- MS-based untargeted proteomics2
- Machine learning2
- Marine biology2
- Mass spectrometry-based metabolomics2
- Metabolites2
- Metabolome2
- Metabolomics2
- Metabonomics2
- Metaproteomics2
- Molecular docking2
- Molecular modelling2
- NMR-based metabolomics2
- Neural networks2
- Peptide identification2
- Protein and peptide identification2
- Proteomics2
- Quantitative proteomics2
- Recommender system2
- Reinforcement learning2
- Research data archiving2
- Supervised learning2
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Operation
- Data handling4
- File handling4
- File processing4
- Processing4
- Report handling4
- Utility operation4
- Data brokering3
- Data deposition3
- Data deposition brokering3
- Data submission3
- Database deposition3
- Database submission3
- Alternative splicing analysis1
- Alternative splicing detection1
- Alternative splicing prediction1
- Cartography1
- Design1
- Differential splicing analysis1
- Docking simulation1
- Macromolecular docking1
- Mapping1
- Molecular docking1
- Molecular dynamics1
- Molecular dynamics simulation1
- Molecular surface analysis1
- Protein dynamics1
- Protein secondary structure visualisation1
- RNA secondary structure visualisation1
- Sequencing QC1
- Sequencing quality assessment1
- Sequencing quality control1
- Splice transcript prediction1
- Split read mapping1
- Split-read mapping1
- Structure database search1
- Structure rendering1
- Structure visualisation1
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Venue
- SIB272
- Earlham Institute (EI), Colney Lane5
- University of Ljubljana, Faculty of Medicine5
- European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Wellcome Genome Campus2
- Institute of Organic Chemistry and Biochemistry AS CR, 2, Flemingovo náměstí2
- Narva mnt 18, room 20052
- Narva mnt 25, room A-5072
- Palacky University Olomouc (UPOL) Faculty of Science tř. 17. listopadu 12 rooms 3.002 (tutorials/challenge), 3.003 (lectures) Olomouc 77900 Czech Republic2
- 17. listopadu, 17. listopadu1
- BEST WESTERN PREMIER Hotel International Brno, Husova 16, 602 00 Brno, Czech Republic1
- BMC Trippelrummet Husargatan 3, entrance C111
- Belval Campus, Luxembourg (more detailed information on the venue will be send to registered participants before the workshop)1
- CCMAR - Center of Marine Sciences1
- CIIMAR-Madeira - Interdisciplinary Centre of Marine and Environmental Research of Madeira1
- Cirad, 389, Avenue Agropolis1
- De Bijloke, Bijlokekaai 7, 7, Bijlokekaai1
- FORTH1
- Gaustadalléen 23, 23, Gaustadalléen1
- Gent ICC1
- ITQB NOVA, Avenida da República1
- Instituto Gulbenkian de Ciência (IGC), 6, Rua Quinta Grande1
- Instituto de Medicina Molecular (IMM), Avenida Professor Egas Moniz1
- Institutt for pedagogikk og lærerutdanning (Faculty of Humanities), Teorifagbygget-Hus 11
- KU Leuven Universiteitshal, 22, Naamsestraat1
- Kamenice 5, 5, Kamenice1
- L69 7ZX1
- La Pedrera, 92, Passeig de Gràcia1
- Leuven1
- MSTC, Sherrington Building, University of Liverpool1
- Melbourne1
- Music Center De Bijloke, 2, Jozef Kluyskensstraat1
- Narva mnt 18, room1
- Narva mnt 18, room 20031
- Narva mnt 18, room 2017; 20051
- Online via Zoom1
- PC-COLLEGE Berlin, 78, Stresemannstraße1
- Palacky University Olomouc (UPOL) Faculty of Science tř. 17. listopadu 12, Olomouc 77900, Czech Republic rooms 3.002 (tutorials/challenge), 3.003 (lectures)1
- Postdoc Centre, 16, Mill Lane1
- Rikli Balance Hotel, Cankarjeva cesta 4, SI-4260 Bled, Slovenia1
- Science and Technology Park of Sardinia, Pula, Italy1
- Skalský Court Hotel, Lísek1
- Technická 1903/3, 3, Technická1
- The Alan Turing Institute, 96, Euston Road1
- University Campus Bohunice, Masaryk University, Brno, Czech Republic1
- University of Cambridge, Trinity Ln1
- University of Ljubljana, Faculty of Medicine, Institute for Biostatistics and Medical Informatics, Vrazov Trg 2, SI-1000, Ljubljana, Slovenia1
- University of Ljubljana, Faculty of Medicine, Vrazov trg 2, SI-1000 Ljubljana, Slovenia1
- University of Milano-Bicocca, Building U7, Lab 7151
- University of Minho - Campus of Gualtar, Rua da Universidade1
- Università degli Studi di Padova - Casa della Gioventù, Via Rio Bianco,121
- Via Principessa Margherita, 461
- Vila Lanna, V Sadech 11
- Virtual (Slack)1
- iad Pc-Pool1
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City
- Lausanne66
- Basel38
- Streamed from Lausanne30
- Streamed from Basel28
- Bern18
- Streamed17
- Zurich10
- Streamed from Bern9
- Streamed from Geneva9
- Ljubljana7
- Streamed from Basel and Lausanne6
- Norwich5
- Tartu5
- Streamed from Basel and Zurich4
- Streamed from Lausanne & Geneva4
- Streamed from Lausanne and Basel4
- Brno3
- Cambridge3
- Fribourg3
- Gent3
- Olomouc3
- Prague3
- Streamed from Grenoble and Geneva3
- Faro2
- Geneva2
- Leuven2
- Liverpool2
- Oeiras2
- Streamed from Geneva, Grenoble, Lyon, Tokyo and Wa2
- Tallinn2
- Barcelona1
- Berlin1
- Bern or Lausanne1
- Bienne/Biel1
- Bled1
- Blended - Streamed and videos1
- Braga1
- Bystřice nad Pernštejnem1
- Davos1
- Esch-sur-Alzette1
- Heraklion1
- Lausanne or Streamed1
- Lausanne or streamed1
- Leipzig1
- Leysin, Switzerland1
- Lisboa1
- London1
- Lyon1
- Melbourne1
- Milan1
- Montferrier-sur-Lez (Montpellier area)1
- Olomouc 91
- Oslo1
- Prague 61
- Procida1
- Pula1
- Schwarzenberg1
- Sempach1
- Streamed from Greece and Mauritius1
- Streamed from Lausanne and Barcelona1
- Streamed from Muttenz1
- Streamed from Sweden, Switzerland, Germany and UK1
- Streamed from the University of Duisburg-Essen1
- Streaming from Lausanne1
- Tromsø1
- Uppsala1
- Villars-sur-Ollon1
- Zurich or streamed1
- streamed from multiple locations1
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Sponsor
- ELIXIR CZ4
- Centre for Digital Life Norway3
- RDA-Portugal3
- ELIXIR2
- ELIXIR EXCELERATE2
- Palacky University Olomouc2
- Palacký University Olomouc2
- Abcam1
- BioConnect1
- BioRad1
- CCMAR1
- Macs Miltenyi Biotec1
- PerkinElmer1
- ThermoFisher1
- UALG1
- Absolute Antibody1
- Aurora1
- Data & Software Carpentry1
- EASI-genomics1
- ELIXIR-CONVERGE1
- EMBO1
- Elixir Belgium1
- European Union1
- Genscript1
- HPC Carpentry1
- INRA1
- INTERREG V-A Italy-Slovenia 2014-2020 project TRAIN1
- Merck1
- NBIS - National Bioinformatics Infrastructure Sweden1
- NORBIS1
- National Research Council of Italy1
- No fund.1
- One Nucleus1
- Repositive1
- Takara1
- Twist Bioscience1
- University of Dundee1
- de.NBI1
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Target audience
- PhD students
- Graduate students294
- Academics290
- Industry290
- PhD287
- Researchers175
- Life Science Researchers49
- Beginner36
- Biologists35
- bioinformaticians31
- Master students27
- Students26
- PhD Students21
- Post Docs17
- life scientists17
- All postgraduates15
- PhD candidates15
- mixed audience15
- post-docs15
- Bioinformaticians13
- PI12
- PhD candidate12
- Professors12
- Graduate Students11
- Molecular Biologists10
- Postdoctoral Fellows10
- Wet-lab researchers and bioinformaticians10
- Biologists, Genomicists, Computer Scientists9
- Technicians9
- Undergraduate students9
- data stewards9
- Data managers8
- Engineers8
- data managers8
- data steward / data manager8
- postdoctoral researchers8
- researchers8
- Beginners7
- DMP writers7
- Life Scientists7
- Postdoctoral Researchers7
- Senior scientist/ Principal investigator7
- Data stewards6
- Masters students6
- Researcher6
- Trainers6
- Bioinformatician5
- Clinicians5
- Expert Support5
- Life sciences5
- PIsSenior scientist/ Principal investigator5
- Post-Docs5
- Researcher in life sciences5
- Scientists5
- postdocs5
- software developers, bioinformaticians5
- Anyone intersted in GWAS and using the H3Africa genotyping chip4
- Bioinformaticians and wet-lab biologists who can program in Perl, Python or R.4
- Computational biologists4
- Early Career Researchers (ECRs)4
- Early career investigators4
- Pathologists4
- PhD student4
- Post docs4
- PostDocs4
- Postgraduate students4
- Principal Investigators4
- Professional science4
- Training Designers4
- Training instructors4
- Wet-lab Researchers4
- beginner bioinformaticians4
- data manager4
- project manager4
- Academic3
- Anyone who wants to become a teacher / trainer or a better one3
- Bench biologists3
- Bioinformaticians and wet-lab biologists who can program in Python or R.3
- Biomedical researchers3
- Clinical Scientists3
- Core Facility Managers3
- Data Managers3
- Data Scientists3
- Early Career Researcher3
- Evolutionary Biologists3
- Government3
- Industry professionals, and people with a keen interest in the subject.3
- Job seeker3
- Lab managers3
- Post-Doctoral Fellows3
- Post-docs3
- Postdoctoral researchers3
- Research Scientists3
- Research presentation3
- Research scientists3
- Small and Medium-sized Enterprises (SMEs)3
- Student3
- This course is aimed at advanced PhD students and post-doctoral researchers who are applying or planning to apply high throughput sequencing technologies in cancer research and wish to familiarise themselves with bioinformatics tools and data analysis methodologies specific to cancer data. Familiarity with the technology and biological use cases of high throughput sequencing is required, as is some experience with R/Bioconductor (basic understanding of the R syntax and ability to manipulate R objects) and the Unix/Linux operating system.3
- This workshop is aimed at wet-lab scientists and bioinformaticians. Participants should have degree-level understanding of molecular biology/genetics and be proficient at using web browsers.3
- basic research3
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Language
- English16
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Instructor
- Geert van Geest4
- Tania Wyss3
- Frédérique Lisacek2
- Rachel Jeitziner2
- Tania Wyss Lozano2
- Wandrille Duchemin2
- Amos Bairoch1
- Anne Morgat1
- Catherine Hayes1
- Elisabeth Gasteiger1
- Hans-Rudolf Hotz1
- Isabelle Dupanloup1
- Lucille Delisle1
- Marco Kreuzer1
- Marie-Claude Blatter1
- Markus Mueller1
- Rachel Marcone1
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