e-learning
Chloroplast genome assembly
Abstract
What is genome assembly?
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How can we assemble a chloroplast genome?
Learning Objectives
- Assemble a chloroplast genome from long reads
- Polish the assembly with short reads
- Annotate the assembly and view
- Map reads to the assembly and view
Licence: Creative Commons Attribution 4.0 International
Keywords: Assembly, biodiversity, jbrowse1, nanopore, plants
Target audience: Students
Resource type: e-learning
Version: 22
Status: Active
Prerequisites:
- Introduction to Galaxy Analyses
- Quality Control
Learning objectives:
- Assemble a chloroplast genome from long reads
- Polish the assembly with short reads
- Annotate the assembly and view
- Map reads to the assembly and view
Date modified: 2026-01-23
Date published: 2020-12-04
Authors: 
Anna Syme
Contributors: Anna Syme, Anthony Bretaudeau, Björn Grüning, Bérénice Batut, Cristóbal Gallardo, Deepti Varshney, Helena Rasche, Saskia Hiltemann, Teresa Müller
Scientific topics: Sequence assembly
External resources:
Activity log
