e-learning
Designing plasmids encoding predicted pathways by using the BASIC assembly method
Abstract
Synthetic biology is a novel engineering discipline which requires computational tools for the design of metabolic pathways for the production of chemicals such as SynBioCAD portal which is the first Galaxy set of tools for synthetic biology and metabolic engineering.
About This Material
This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.
Questions this will address
- How to design plasmids encoding predicted pathways using BASIC assembly method ?
- How to generate scripts enabling the automatic build of plasmids ?
Learning Objectives
- Annotate the SBML pathway using Selenzy tool.
- Design plasmids encoding predicted pathways using rpbasicdesign tool.
- Generate dnabot scripts enabling the automatic build of plasmids.
Licence: Creative Commons Attribution 4.0 International
Keywords: Synthetic Biology
Competency level: • Beginner
Target audience: Students
Resource type: e-learning
Version: 8
Status: Active
Prerequisites:
Introduction to Galaxy Analyses
Learning objectives:
- Annotate the SBML pathway using Selenzy tool.
- Design plasmids encoding predicted pathways using rpbasicdesign tool.
- Generate dnabot scripts enabling the automatic build of plasmids.
Date modified: 2024-06-14
Date published: 2022-05-12
Authors: 
Guillaume Gricourt, Ioana Popescu, Jean-Loup Faulon, Joan Hérisson, Kenza Bazi-Kabbaj, Thomas Duigou
Contributors: Helena Rasche, Kenza Bazi-Kabbaj, Saskia Hiltemann
Scientific topics: Synthetic biology
Activity log
