e-learning

Reference Data with CVMFS

View material

Abstract

> These words come from a transcript of Simon Gladman teaching this course. He

About This Material

This is a Hands-on Tutorial from the GTN which is usable either for individual self-study, or as a teaching material in a classroom.

Learning Objectives

  • Have an understanding of what CVMFS is and how it works
  • Install and configure the CVMFS client on a linux machine and mount the Galaxy reference data repository
  • Configure your Galaxy to use these reference genomes and indices
  • Use an Ansible playbook for all of the above.

Licence: Creative Commons Attribution 4.0 International

Keywords: Galaxy Server administration, ansible, git-gat

Competency level: • Beginner

Target audience: Galaxy Administrators

Resource type: e-learning

Version: 55

Status: Active

Prerequisites:

  • Ansible
  • Galaxy Installation with Ansible

Learning objectives:

  • Have an understanding of what CVMFS is and how it works
  • Install and configure the CVMFS client on a linux machine and mount the Galaxy reference data repository
  • Configure your Galaxy to use these reference genomes and indices
  • Use an Ansible playbook for all of the above.

Date modified: 2026-01-23

Date published: 2019-01-27

Authors: Helena Rasche, Simon Gladman

Contributors: Marius van den Beek, Björn Grüning, Bérénice Batut, Gianmauro Cuccuru, Helena Rasche, Lucille Delisle, Martin Čech, Nate Coraor, Nicola Soranzo, Saskia Hiltemann, Simon Gladman

Activity log