slides
Plates, Batches, and Barcodes
Abstract
Sorting Plates
Questions this will address
- What is a batch when it comes to single cells?
- What’s the difference between a barcode and an index?
- What is batch effect and how do you prevent it?
- What is a lane?
Learning Objectives
- How to set up plates to prevent batch effect
- Proper naming conventions when dealing with scRNA-seq samples
Licence: Creative Commons Attribution 4.0 International
Keywords: Single Cell
Competency level: • Beginner
Target audience: Students
Resource type: slides
Version: 4
Status: Active
Prerequisites:
- Introduction to Galaxy Analyses
- Understanding Barcodes
Learning objectives:
- How to set up plates to prevent batch effect
- Proper naming conventions when dealing with scRNA-seq samples
Date modified: 2025-02-13
Date published: 2019-02-16
Authors: Mehmet Tekman, 
Alex Ostrovsky
Contributors: Mehmet Tekman, Björn Grüning, Helena Rasche, Saskia Hiltemann, Wendi Bacon
Scientific topics: Transcriptomics
Activity log
