slides
Quality Control
Abstract
Why Quality Control?
Questions this will address
- How to control quality of NGS data?
- What are the quality parameters to check for each dataset?
- How to improve the quality of a sequence dataset?
Learning Objectives
- Manipulate FASTQ files
- Control quality from a FASTQ file for short and long reads
- Use FastQC/NanoPlot/PycoQC
- Understand output
- Use tools for quality correction
Licence: Creative Commons Attribution 4.0 International
Keywords: Sequence analysis
Competency level: • Beginner
Target audience: Students
Resource type: slides
Version: 19
Status: Active
Prerequisites:
Introduction to Galaxy Analyses
Learning objectives:
- Manipulate FASTQ files
- Control quality from a FASTQ file for short and long reads
- Use FastQC/NanoPlot/PycoQC
- Understand output
- Use tools for quality correction
Date modified: 2024-12-02
Date published: 2016-10-04
Authors: 
Alexandre Cormier, Anthony Bretaudeau, Bérénice Batut, Erwan Corre, Laura Leroi, Stéphanie Robin
Contributors: Niall Beard, Swathi Nataraj, William Durand, Alexandre Cormier, Anthony Bretaudeau, Björn Grüning, Bérénice Batut, Cristóbal Gallardo, Helena Rasche, Mateo Boudet, Nicola Soranzo, Saskia Hiltemann
Scientific topics: Sequence analysis
External resources:
Activity log
