Training materials
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ELIXIR TeSS
hands-on tutorial
Nextflow for reproducible and automated data analysis
•• IntermediateWorkflow Software engineering Computing environment Nextflow Reproducible data analysis Workflow -
ELIXIR TeSS
hands-on tutorial
Single cell RNA-seq analysis
•• IntermediateTranscriptomics Single-cell sequencing Single cell data transcriptomics -
ELIXIR TeSS
hands-on tutorial
Containerise data analysis with Docker and Apptainer
•• IntermediateDocker image Software engineering Apptainer Computing environment Container Docker -
ELIXIR TeSS
Metagenomic training - Genotoul-bioinfo
•• Intermediatehttp://edamontology.org/topic_3174 -
ELIXIR TeSS
e-learning
Content Tracking and Verification in Galaxy Workflows with ISCC-SUM
•• IntermediateImaging Data handling Data management Data sharing Imaging Validation -
ELIXIR TeSS
e-learning
Execute a BiaPy workflow in Galaxy
•• IntermediateImaging 3D image Conversion Deep learning Image annotation Image segmentation Imaging Overlay Volume rendering -
ELIXIR TeSS
E-Learning
Crypt4GH Integration with proTES: A Guide to Secure Genomic Analysis
•• IntermediateData security Computer science GA4GH Security ELIXIR -
ELIXIR TeSS
E-Learning
Analysis of Sensitive Data in Secure Processing Environments (SPE)
•• IntermediateComputer science Data security Security Computational research GA4GH WES WESkit -
ELIXIR TeSS
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DES RAP Book: Reproducible Discrete-Event Simulation in Python and R
•• IntermediateComputer science Data visualisation Data management FAIR data Informatics Open science Statistics and probability Version control Workflows Automated testing … -
ELIXIR TeSS
e-learning
GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000
•• IntermediateStatistics and probability Deep Learning HAM10000 Dataset Image Classification Image Learner Skin Lesion Classification Statistics and Machine Learning