Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • DNA variation6
    • Genetic variation6
    • Genomic variation6
    • Mutation6
    • Polymorphism6
    • Somatic mutations6
    • Bottom-up proteomics3
    • Discovery proteomics3
    • MS-based targeted proteomics3
    • MS-based untargeted proteomics3
    • Metaproteomics3
    • Peptide identification3
    • Protein and peptide identification3
    • Proteomics3
    • Quantitative proteomics3
    • Targeted proteomics3
    • Top-down proteomics3
    • Antimicrobial stewardship1
    • Assembly1
    • Biological sequences1
    • DNA polymorphism1
    • Exomes1
    • Genome annotation1
    • Genomes1
    • Genomics1
    • Medical microbiology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Microsatellites1
    • Molecular infection biology1
    • Molecular microbiology1
    • Personal genomics1
    • RFLP1
    • SNP1
    • Sequence analysis1
    • Sequence assembly1
    • Sequence databases1
    • Single nucleotide polymorphism1
    • Synthetic genomics1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • Viral genomics1
    • Whole genomes1
    • snps1
    • Show N_FILTERS more
    • Tool
    • FreeBayes
    • Galaxy364
    • Bioconductor242
    • FastQC36
    • SAMtools27
    • MultiQC26
    • BWA21
    • REDCap20
    • Data Stewardship Wizard19
    • BEDTools17
    • fastp16
    • scikit-learn16
    • JBrowse15
    • SCANPY15
    • Falco14
    • Cutadapt13
    • DeepTools13
    • ggplot213
    • BLAST12
    • QUAST12
    • BUSCO11
    • RStudio11
    • STAR11
    • GEMINI10
    • Galaxy Image Analysis10
    • scikit-image10
    • taxonomy_krona_chart10
    • NanoPlot9
    • RDMkit9
    • Trimmomatic9
    • Bandage8
    • FASTX-Toolkit8
    • BCFtools7
    • BamTools7
    • Biopython7
    • HISAT27
    • Trim Galore7
    • msConvert7
    • seqtk7
    • Flye6
    • MAFFT6
    • MaxQuant6
    • Minimap26
    • Ontology Lookup Service6
    • Open Babel6
    • Unicycler6
    • Workflow4Metabolomics6
    • gffread6
    • BridgeDb5
    • COPASI5
    • DESeq25
    • European Nucleotide Archive (ENA)5
    • Galactic Circos5
    • MetaPhlAn5
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • SRA Software Toolkit5
    • Salmon5
    • StringTie5
    • anndata5
    • annotatemyids5
    • compute_sequence_length5
    • gffcompare5
    • kraken25
    • xcms5
    • Bowtie 24
    • Bwa-mem24
    • CellProfiler4
    • Chipster4
    • Diamond4
    • GOseq4
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • QualiMap4
    • The Protein Data Bank (PDB)4
    • UniProt4
    • bx-python4
    • mothur4
    • snpEff4
    • Apollo3
    • Bakta3
    • Bracken3
    • BridgeDbR3
    • Cardinal3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • OMArk3
    • OMERO3
    • R3
    • Show N_FILTERS more
    • Content provider
    • GTN9
    • Show N_FILTERS more
    • Keyword
    • Variant Analysis6
    • Proteomics3
    • label-free2
    • microgalaxy1
    • prokaryote1
    • proteogenomics1
    • Show N_FILTERS more
    • Competency level
    • Beginner8
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International9
    • Show N_FILTERS more
    • Target audience
    • Students9
    • Show N_FILTERS more
    • Author
    • Anton Nekrutenko3
    • James Johnson3
    • Subina Mehta3
    • Wolfgang Maier3
    • Katherine Do2
    • Khaled Jum'ah2
    • Alex Ostrovsky1
    • Anika Erxleben1
    • Björn Grüning1
    • Bérénice Batut1
    • David Salgado1
    • Katarzyna Kamieniecka1
    • Krzysztof Poterlowicz1
    • Nick Stoler1
    • Nicola Soranzo1
    • Pratik Jagtap1
    • Praveen Kumar1
    • Ray Sajulga1
    • Timothy J. Griffin1
    • Torsten Houwaart1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann8
    • Björn Grüning7
    • Helena Rasche7
    • Bérénice Batut5
    • Nicola Soranzo5
    • Niall Beard4
    • William Durand3
    • Wolfgang Maier3
    • Anthony Bretaudeau2
    • Gildas Le Corguillé2
    • Pratik Jagtap2
    • Simon Gladman2
    • Subina Mehta2
    • Timothy J. Griffin2
    • Verena Moosmann2
    • Alex Ostrovsky1
    • Alexandre Cormier1
    • Anton Nekrutenko1
    • Armin Dadras1
    • Ekaterina Polkh1
    • James Johnson1
    • Katarzyna Kamieniecka1
    • Katherine Do1
    • Khaled Jum'ah1
    • Maria Doyle1
    • Martin Čech1
    • Mateo Boudet1
    • Melanie Föll1
    • Mélanie Petera1
    • Nate Coraor1
    • Teresa Müller1
    • Vijay1
    • Show N_FILTERS more
    • Resource type
    • e-learning9
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets9
    • Associated Workflows8
    • Show N_FILTERS more
    • Collection
    • ELIXIR hCNV community - collection of courses and materials.1
    • Show N_FILTERS more
  • Only show materials from current space
  • Show disabled materials
  • Hide materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: FreeBayes

and Include broken links: true

and Across all spaces: true

9 materials found
  • e-learning

    Neoantigen 1b: Non-Reference-Database-Generation

    • Beginner
    Proteomics Proteomics label-free
  • e-learning

    Neoantigen 2: Non-normal-Database-Generation

    • Beginner
    Proteomics Proteomics label-free
  • e-learning

    Somatic Variant Discovery from WES Data Using Control-FREEC

    • Beginner
    Genetic variation Variant Analysis
  • e-learning

    Exome sequencing data analysis for diagnosing a genetic disease

    • Beginner
    Genetic variation Variant Analysis
  • e-learning

    Identification of somatic and germline variants from tumor and normal sample pairs

    • Beginner
    Genetic variation Variant Analysis
  • e-learning

    Calling variants in non-diploid systems

    • Beginner
    Genetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote
  • e-learning

    Calling variants in diploid systems

    • Beginner
    Genetic variation Variant Analysis
  • e-learning

    Calling very rare variants

    • Beginner
    Genetic variation Variant Analysis
  • e-learning

    Proteogenomics 1: Database Creation

    •• Intermediate
    Proteomics Proteomics proteogenomics
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.