Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Antimicrobial stewardship2
    • Biological sequences2
    • De novo genome sequencing2
    • Exomes2
    • Genome annotation2
    • Genome sequencing2
    • Genomes2
    • Genomics2
    • Medical microbiology2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • Personal genomics2
    • Sequence analysis2
    • Sequence databases2
    • Synthetic genomics2
    • Viral genomics2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • Whole genomes2
    • AMR1
    • Antibiotic resistance (ABR)1
    • Antifungal resistance1
    • Antimicrobial resistance1
    • Antiprotozoal resistance1
    • Antiviral resistance1
    • Assembly1
    • Communicable disease1
    • Community analysis1
    • Environmental microbiology1
    • Epidemiology1
    • Extensive drug resistance (XDR)1
    • Functional genomics1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Infectious disease1
    • Metagenomics1
    • Microbial ecology1
    • Microbiome1
    • Mobile genetic elements1
    • Molecular community analysis1
    • Multidrug resistance1
    • Multiple drug resistance (MDR)1
    • Multiresistance1
    • Pandrug resistance (PDR)1
    • Protein families1
    • Protein sequence classification1
    • Public health1
    • Public health and epidemiology1
    • Sequence assembly1
    • Shotgun metagenomics1
    • Total drug resistance (TDR)1
    • Transmissible disease1
    • Transposons1
    • Show N_FILTERS more
    • Tool
    • Bakta
    • Galaxy320
    • FastQC27
    • SAMtools21
    • BWA20
    • MultiQC20
    • BEDTools14
    • SCANPY14
    • fastp14
    • Falco13
    • JBrowse12
    • BLAST11
    • ggplot211
    • scikit-learn11
    • BUSCO10
    • Cutadapt10
    • DeepTools10
    • Galaxy Image Analysis10
    • QUAST10
    • scikit-image10
    • RStudio9
    • Trimmomatic9
    • taxonomy_krona_chart9
    • FreeBayes8
    • GEMINI8
    • STAR8
    • BCFtools7
    • Bandage7
    • NanoPlot7
    • msConvert7
    • BamTools6
    • FASTX-Toolkit6
    • Flye6
    • HISAT26
    • MAFFT6
    • MaxQuant6
    • Open Babel6
    • seqtk6
    • Biopython5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • SRA Software Toolkit5
    • Workflow4Metabolomics5
    • anndata5
    • annotatemyids5
    • compute_sequence_length5
    • gffread5
    • kraken25
    • Bowtie 24
    • Bwa-mem24
    • Diamond4
    • GOseq4
    • Galactic Circos4
    • KrakenTools4
    • MSstats4
    • MetaPhlAn4
    • Newick Utilities4
    • RSeQC4
    • The Protein Data Bank (PDB)4
    • Trim Galore4
    • UniProt4
    • Unicycler4
    • bx-python4
    • mothur4
    • xcms4
    • Bracken3
    • Cardinal3
    • CellProfiler3
    • DESeq23
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • InterProScan (EBI)3
    • MACS3
    • Merqury3
    • OMArk3
    • QualiMap3
    • RDKit3
    • Salmon3
    • Stacks3
    • StringTie3
    • Vcflib3
    • dRep3
    • gfastats3
    • gffcompare3
    • iqtree3
    • lofreq3
    • snippy3
    • snpEff3
    • Apollo2
    • Bio3D2
    • COMBAT-TB Workbench2
    • ChEMBL2
    • CheckM2
    • Circos2
    • Clustal 1.8 (Clustal W, Clustal X)2
    • European Nucleotide Archive (ENA)2
    • FeatureCounts2
    • GOEnrichment2
    • GraPhlAn2
    • Show N_FILTERS more
    • Content provider
    • GTN3
    • Show N_FILTERS more
    • Keyword
    • microgalaxy3
    • Genome Annotation2
    • gmod2
    • illumina2
    • jbrowse12
    • Microbiome1
    • amr1
    • assembly1
    • bacteria1
    • binning1
    • metagenomics1
    • one-health1
    • Show N_FILTERS more
    • Competency level
    • Beginner2
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut3
    • Bazante Sanders1
    • Show N_FILTERS more
    • Contributor
    • Bérénice Batut3
    • Anthony Bretaudeau2
    • Björn Grüning2
    • Helena Rasche2
    • Paul Zierep2
    • Saskia Hiltemann2
    • Bazante Sanders1
    • Deepti Varshney1
    • Giuseppe Defazio1
    • Miaomiao Zhou1
    • Natalie Whitaker-Allen1
    • Teresa Müller1
    • Tristan Reynolds1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets2
    • Associated Workflows2
    • Show N_FILTERS more
  • Only show materials from current space
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

e-Learning

  • Subscribe via email

Email Subscription

Register training material

Tools: Bakta

and Resource type: e-learning

and Across all spaces: true

3 e-learning materials found
  • e-learning

    Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads

    •• Intermediate
    Metagenomics Microbial ecology Sequence assembly Microbiome assembly binning metagenomics microgalaxy
  • e-learning

    Identification of AMR genes in an assembled bacterial genome

    • Beginner
    Genomics Whole genome sequencing Public health and epidemiology Microbiology Sequence analysis Infectious disease Antimicrobial resistance Genome Annotation amr gmod …
  • e-learning

    Bacterial Genome Annotation

    • Beginner
    Genomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements Genome Annotation bacteria gmod …
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.