Materials - TeSS (Training eSupport System)

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- Scientific topic
- Shotgun metagenomics
- Data management226
- Metadata management226
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- Genome annotation219
- Exomes198
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- Personal genomics198
- Synthetic genomics198
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- R150
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- MicroRNA sequencing125
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- RNA-Seq analysis125
- Small RNA sequencing125
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- miRNA-seq125
- Algorithms121
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- Chromosome walking106
- Clone verification106
- DNA-Seq106
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- High throughput sequencing106
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- NGS106
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- Panels106
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- Active learning88
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- Biodiversity69
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- Protein and peptide identification62
- Proteomics62
- Quantitative proteomics62
- Targeted proteomics62
- Top-down proteomics62
- Single-cell genomics60
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- Antimicrobial stewardship56
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- Microbial physiology56
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- Tool
- Galaxy27
- taxonomy_krona_chart10
- FastQC7
- MultiQC6
- MetaPhlAn5
- Cutadapt4
- KrakenTools4
- fastp4
- kraken24
- GraPhlAn3
- Newick Utilities3
- SortMeRNA3
- export2graphlan3
- humann3
- mothur3
- BEDTools2
- BamTools2
- Bandage2
- Bowtie 22
- Combine Metaphlan and HUMAnN2
- HUMAnN22
- MGnify (was EBI Metagenomics)2
- MaxQuant2
- Minimap22
- NanoPlot2
- UniProt2
- dRep2
- ggplot22
- lotus22
- metaQuantome2
- ABRicate1
- BCFtools1
- Bakta1
- Bracken1
- CONCOCT1
- CheckM1
- Clair31
- Clustal 2 (Clustal W, Clustal X)1
- CoverM1
- DISEASES1
- EXTRACT1
- FASTX-Toolkit1
- FastTree1
- Flye1
- Infernal1
- Krona1
- MAPseq1
- MEGAHIT1
- MGnify1
- MLST1
- MSstats1
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- Medaka1
- MetaBAT 21
- MetaNovo1
- NGSUtils1
- ORGANISMS1
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- QUAST1
- Racon1
- SAMtools1
- SRA Software Toolkit1
- SeqPrep1
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- ampvis1
- biomformat1
- bx-python1
- cmsearch-deoverlap1
- dada21
- dastool1
- metaspades1
- miniasm1
- msConvert1
- phyloseq1
- seqtk1
- staramr1
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- Content provider
- GTN38
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- GOBLET2
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- Novo Nordisk Foundation Center for Protein Research1
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- Keyword
- Metagenomics31
- Microbiome29
- microgalaxy19
- metagenomics18
- Microbiology14
- Next generation sequencing8
- Genome assembly7
- Genomics6
- 16S5
- label-TMT115
- metabarcoding5
- taxonomic profiling5
- MGnify4
- R4
- Unix/Linux4
- assembly4
- diversity4
- metatranscriptomics4
- nanopore4
- General3
- Comparative genomics2
- Data management2
- Genome Assembly2
- Genome analysis2
- Genome annotation2
- Genomic data2
- Genomic sequences2
- Heatmap2
- Long read sequencing2
- Nanopore data analysis2
- Nextflow2
- Pathogens detection2
- Phylogenetic tree2
- Proteomics2
- Sequence Analysis2
- Taxonomic concepts2
- beer2
- binning2
- citizen science2
- cyoa2
- genomics2
- microbiome2
- ATAC-seq1
- Data science1
- Data visualization1
- EeLP1
- Environmental DNA1
- Epigenetics1
- FAIR data1
- Marine Metagenomics1
- Metabolites1
- Metabolome1
- Metabolomics1
- Microbial DNA1
- Multiomics1
- Open access1
- RNA-seq1
- Reproducibility1
- Sequence analysis1
- Small molecules1
- Transcriptomics1
- Variant analysis1
- Workflows1
- Workshop1
- amplicon1
- amr1
- eDNA1
- eLearning1
- ecology1
- fungi1
- hologenomics1
- host-removal1
- microbial ecosystems1
- plants1
- plasmids1
- preprocessing1
- taxonomic abundance1
- taxonomy1
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- Competency level
- Not specified39
- Beginner33
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- Licence
- Creative Commons Attribution 4.0 International41
- License Not Specified30
- Creative Commons Attribution Non Commercial Share Alike 4.0 International4
- MIT License2
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
- Creative Commons Zero v1.0 Universal1
- GNU General Public License v3.0 only1
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- Target audience
- Students38
- PhD students5
- Clinicians4
- Life Scientists3
- Researchers3
- Genomics data science PhD students2
- PhD2
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members2
- PhD candidates2
- Researcher in life sciences2
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA2
- genomics researchers2
- Bioinformaticians1
- Biologists1
- Master students1
- post-docs1
- postdocs1
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- Author
- Bérénice Batut22
- Subina Mehta12
- Saskia Hiltemann11
- Paul Zierep10
- Pratik Jagtap7
- bioinformatics.ca7
- Emma Leith6
- Praveen Kumar6
- Dechen Bhuming5
- Katherine Do5
- The Carpentries Lab5
- Polina Polunina4
- Ray Sajulga4
- Engy Nasr3
- Erik Hjerde3
- Espen Mikal Robertsen3
- Sophia Hampe3
- Alex Mitchell2
- Dave Clements2
- Marie Crane2
- QIIME22
- Rob Finn2
- Siyu Chen2
- Teresa Müller2
- Timothy J. Griffin2
- Varsha Kale2
- Vini Salazar2
- Andrea Telatin1
- Canadian Bioinformatics Workshops1
- Computational Metagenomics1
- Cristóbal Gallardo1
- Didier Debroas1
- Espen Aberg1
- Evangelos Pafilis1
- Fabio Cumbo1
- Fotis E. Psomopoulos1
- Genome Informatics Facility1
- Germana Baldi1
- Guillermo Rangel Pineros1
- Jacob Rasmussen1
- Jaelle Brealey1
- Lars Juhl Jensen1
- Lorna Richardson1
- Maria Victoria ...1
- Martin Hansen1
- Matteo Calgaro1
- Melanie Pajero1
- Mina Hojat Ansari1
- Morten Limborg1
- Nadia Goué1
- Nikos Pechlivanis1
- Nils Peder Willassen1
- Ola Tarkowska1
- Paul Yorke1
- Rand Zoabi1
- Rebecca Campos1
- SIB Swiss Institute of Bioinformatics1
- SLU Global Bioinformatics Centre1
- Sandy Rogers1
- Sofia Marcos1
- Sujai Kumar1
- The Gulbenkian Training Programme in Bioinformatics1
- UC Davis Bioinformatics Core Training Page1
- Waldron Lab at the CUNY SPH1
- Willem de Koning1
- microbiome1
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- Contributor
- Saskia Hiltemann26
- Bérénice Batut23
- Helena Rasche15
- Björn Grüning14
- Paul Zierep12
- Canadian Bioinformatics Workshops7
- Pratik Jagtap7
- Cristóbal Gallardo6
- Aaron E. Jaime5
- AbrahamAvelar5
- Claudia Zirión Martínez5
- Deepti Varshney5
- J. Abel Lovaco5
- Nelly Sélem5
- Robyn Wright5
- Subina Mehta5
- Timothy J. Griffin5
- Toby Hodges5
- Abby Cabunoc Mayes4
- Allen Lee4
- Andrew Sanchez4
- Andy Boughton4
- Bianca Peterson4
- Brandon Curtis4
- C. Titus Brown4
- David Mawdsley4
- David Pérez-Suárez4
- Diego Garfias Gallegos4
- Erin Becker4
- EvanWill4
- François Michonneau4
- Gabriel A. Devenyi4
- Ian Lee4
- Jeff Oliver4
- Jemma Stachelek4
- Joel Nothman4
- Jon Pipitone4
- Jonah Duckles4
- Katie Anne Mills4
- Katrin Leinweber4
- Maxim Belkin4
- Michael Hansen4
- Michael R. Crusoe4
- Natalie Whitaker-Allen4
- Nick Young4
- Piotr Banaszkiewicz4
- Raniere Silva4
- Remi Rampin4
- Teresa Müller4
- Tracy Teal4
- W. Trevor King4
- William L. Close4
- naught1014
- zhibinlu4
- CladoniaRang3
- Engy Nasr3
- Nicola Soranzo3
- Pete3
- Rayna M Harris3
- Sarah Brown3
- Tristan Reynolds3
- William Durand3
- maneesha3
- Aaron O'Leary2
- Alex Mitchell2
- Alex Whan2
- Amanda Charbonneau2
- Amy Brown2
- Ana Conrado2
- Ana Popovic2
- Anna Syme2
- Annajiat Alim Rasel2
- Anthony Gitter2
- Ariel Rokem2
- Bartosz Telenczuk2
- Carol Willing2
- Chris Erdmann2
- Christina K.2
- Christine Oger2
- Colin2
- David Beitey2
- Diana2
- Donny Winston2
- Emma Leith2
- Florian Rathgeber2
- Gerard Capes2
- Greg Wilson2
- Hena2
- Hilmar Lapp2
- Igor Makunin2
- Ivan Gonzalez2
- James Allen2
- JesseKerkvliet2
- John Blischak2
- João Rodrigues2
- K.E. Koziar2
- Karen Word2
- Kate Hertweck2
- Kenny Gillen2
- Krishnakumar Gopalakrishnan, PhD2
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- Resource type
- e-learning33
- hands-on tutorial7
- Recorded webinar4
- slides3
- Course materials2
- Slides2
- Tutorial2
- course materials2
- Training materials1
- Webinar1
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- Related resource
- Associated Training Datasets27
- Associated Workflows26
- ARROWSMITH1
- ENA1
- HoloFood Project1
- MGnify1
- MetaboLights1
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- Node
- Switzerland24
- EMBL-EBI12
- Norway3
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- Collection
- ELIXIR Biodiversity Community2
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- Active3
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Scientific topics: Shotgun metagenomics

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