Materials - TeSSHub

Filter Clear filters
- Date added
- In the last 24 hours
- In the last 1 week
- In the last 1 month
- Scientific topic
- Biological sequences17
- Metagenomics17
- Sequence analysis17
- Sequence databases17
- Shotgun metagenomics17
- Community analysis15
- Environmental microbiology15
- Microbial ecology15
- Microbiome15
- Molecular community analysis15
- Taxonomy9
- Algorithms8
- Computer programming8
- Data structures8
- Programming languages8
- Software development8
- Software engineering8
- Antimicrobial stewardship7
- Exomes7
- Genome annotation7
- Genomes7
- Genomics7
- Medical microbiology7
- Microbial genetics7
- Microbial physiology7
- Microbial surveillance7
- Microbiological surveillance7
- Microbiology7
- Molecular infection biology7
- Molecular microbiology7
- Personal genomics7
- Synthetic genomics7
- Viral genomics7
- Whole genomes7
- Bayesian methods6
- Biostatistics6
- Comparative transcriptomics6
- Descriptive statistics6
- Gaussian processes6
- Inferential statistics6
- Markov processes6
- Multivariate statistics6
- Probabilistic graphical model6
- Probability6
- Statistics6
- Statistics and probability6
- Transcriptome6
- Transcriptomics6
- Assembly5
- De novo genome sequencing5
- Genome sequencing5
- Sequence assembly5
- WGS5
- Whole genome resequencing5
- Whole genome sequencing5
- DNA metabarcoding4
- DNA variation4
- Environmental metabarcoding4
- Epidemiology4
- Epigenomics4
- Genetic variation4
- Genomic variation4
- Metabarcoding4
- Mutation4
- Polymorphism4
- Public health4
- Public health and epidemiology4
- RNA metabarcoding4
- Somatic mutations4
- eDNA metabarcoding4
- eRNA metabarcoding4
- Mobile genetic elements3
- Transposons3
- AMR2
- Antibiotic resistance (ABR)2
- Antifungal resistance2
- Antimicrobial resistance2
- Antiprotozoal resistance2
- Antiviral resistance2
- Extensive drug resistance (XDR)2
- Function analysis2
- Functional analysis2
- Metatranscriptomics2
- Multidrug resistance2
- Multiple drug resistance (MDR)2
- Multiresistance2
- Pandrug resistance (PDR)2
- Protein function analysis2
- Protein function prediction2
- Total drug resistance (TDR)2
- Communicable disease1
- Disease1
- Functional genomics1
- Gene and protein families1
- Gene families1
- Gene family1
- Gene system1
- Genes, gene family or system1
- Genetic linkage1
- Infectious disease1
- Show N_FILTERS more
- Tool
- Galaxy38
- FastQC12
- SAMtools7
- taxonomy_krona_chart7
- Cutadapt6
- DeepTools5
- Falco5
- MultiQC5
- BEDTools4
- Bandage4
- KrakenTools4
- MetaPhlAn4
- NanoPlot4
- Bakta3
- BamTools3
- JBrowse3
- Newick Utilities3
- QUAST3
- fastp3
- ggplot23
- kraken23
- mothur3
- BCFtools2
- Bracken2
- FASTQE2
- Flye2
- GraPhlAn2
- HUMAnN22
- JBrowse 22
- MACS2
- Minimap22
- STAR2
- SortMeRNA2
- Trim Galore2
- UCSC Genome Browser Utilities2
- export2graphlan2
- humann2
- pycoQC2
- seqtk2
- tbl2gff32
- ABRicate1
- BLAST1
- BWA1
- Bowtie1
- Bowtie 21
- Bwa-mem21
- Clair31
- Clustal 2 (Clustal W, Clustal X)1
- Combine Metaphlan and HUMAnN1
- CoverM1
- DESeq21
- FastTree1
- FeatureCounts1
- Filtlong1
- FreeBayes1
- GEMINI1
- GOseq1
- ISEScan1
- Integron Finder1
- Krona1
- MEGAHIT1
- MEME1
- MLST1
- Medaka1
- NGSUtils1
- Nextclade1
- Peakachu1
- PlasmidFinder1
- Polypolish1
- R1
- RCAS1
- RSeQC1
- Recentrifuge1
- SRA Software Toolkit1
- TRANSIT1
- Trimmomatic1
- UMI-tools1
- bx-python1
- dRep1
- dada21
- metaspades1
- pangolin1
- pathview1
- phyloseq1
- scikit-learn1
- shovill1
- staramr1
- Show N_FILTERS more
- Content provider
- GTN90
- Show N_FILTERS more
- Keyword
- microgalaxy17
- Contributing to the Galaxy Training Material15
- Microbiome14
- elixir11
- metagenomics10
- Statistics and Machine Learning6
- Teaching and Hosting Galaxy Training6
- deutsch6
- español6
- italiano6
- train-the-trainers6
- Development in Galaxy5
- Large Language Model5
- ai-ml5
- jupyter-notebook5
- Community4
- Epigenetics4
- Galaxy Community Building4
- SIG4
- Sequence Analysis4
- Transcriptomics4
- assembly4
- illumina4
- metatranscriptomics4
- work-in-progress4
- 16S3
- Genome Annotation3
- Introduction to Galaxy Analyses3
- Variant Analysis3
- bacteria3
- metabarcoding3
- Assembly2
- ChIP-seq2
- CoDex2
- Foundations of Data Science2
- Using Galaxy and Managing your Data2
- amr2
- cyoa2
- gmod2
- interactive-tools2
- jbrowse12
- nanopore2
- one-health2
- FAIR1
- Galaxy Server Administration1
- Heatmap1
- Nanopore data analysis1
- Pathogens detection1
- Phylogenetic tree1
- QC1
- Single Cell1
- beer1
- binning1
- bulk1
- citizen science1
- collections1
- covid191
- diversity1
- drosophila1
- essential genes1
- rna-seq1
- taxonomic profiling1
- tnseq1
- virology1
- workflows1
- Show N_FILTERS more
- Competency level
- Beginner73
- Not specified9
- Intermediate8
- Show N_FILTERS more
- Licence
- Creative Commons Attribution 4.0 International90
- Show N_FILTERS more
- Target audience
- Students59
- Instructors25
- Galaxy Administrators6
- Show N_FILTERS more
- Author
- Bérénice Batut
- Helena Rasche42
- Saskia Hiltemann38
- Björn Grüning34
- Anthony Bretaudeau19
- Anton Nekrutenko17
- Nicola Soranzo15
- Simon Gladman15
- Paul Zierep14
- Subina Mehta13
- Dave Clements12
- Delphine Lariviere11
- Fotis E. Psomopoulos11
- Nate Coraor10
- Anika Erxleben9
- Anne Pajon8
- Cristóbal Gallardo8
- Pratik Jagtap8
- Wolfgang Maier8
- Anna Syme7
- Emma Leith7
- Florian Christoph Sigloch7
- Joachim Wolff7
- Nadia Goué7
- Allegra Via6
- Anne Fouilloux6
- Christopher Barnett6
- Clemens Blank6
- ELIXIR Goblet Train the Trainers6
- Patricia Palagi6
- Praveen Kumar6
- Yvan Le Bras6
- Alexandre Cormier5
- Dechen Bhuming5
- Erwan Corre5
- John Chilton5
- Katherine Do5
- Laura Leroi5
- Raphael Mourad5
- Simon Bray5
- Solenne Correard5
- Stéphanie Robin5
- Wendi Bacon5
- Alex Ostrovsky4
- Andrea Bagnacani4
- Bazante Sanders4
- Cyril Monjeaud4
- Keiler Collier4
- Mallory Freeberg4
- Maria Doyle4
- Martin Čech4
- Mehmet Tekman4
- Melanie Föll4
- Pavankumar Videm4
- Ray Sajulga4
- Timothy J. Griffin4
- Vivek Bhardwaj4
- Youri Hoogstrate4
- Anup Kumar3
- Daniel Blankenberg3
- Dannon Baker3
- Data Carpentry3
- Engy Nasr3
- Fidel Ramirez3
- Gianmauro Cuccuru3
- Gildas Le Corguillé3
- Lisanna Paladin3
- Marie Crane3
- Marius van den Beek3
- Michele Maroni3
- Mo Heydarian3
- Olha Nahorna3
- Torsten Seemann3
- Avans Hogeschool2
- Aysam Guerler2
- Brandon Pickett2
- Clea Siguret2
- Ekaterina Polkh2
- Friederike Dündar2
- Hans-Rudolf Hotz2
- Katarzyna Kamieniecka2
- Khaled Jum'ah2
- Krzysztof Poterlowicz2
- Leily Rabbani2
- Linelle Abueg2
- Lucille Delisle2
- Markus Wolfien2
- Peter van Heusden2
- Polina Polunina2
- Ralf Gabriels2
- Romane LIBOUBAN2
- Sophia Hampe2
- Teresa Müller2
- Tharindu Senapathi2
- The Carpentries2
- Toby Hodges2
- Vini Salazar2
- Achim Winandi1
- Ahmed Hamid Awan1
- Alaa Elghamry1
- Show N_FILTERS more
- Contributor
- Bérénice Batut
- Saskia Hiltemann93
- Björn Grüning72
- Helena Rasche69
- Nicola Soranzo38
- Cristóbal Gallardo29
- Niall Beard26
- Anthony Bretaudeau25
- Martin Čech21
- William Durand20
- Teresa Müller16
- Gildas Le Corguillé15
- Armin Dadras14
- Paul Zierep13
- Wendi Bacon13
- Tristan Reynolds10
- Wolfgang Maier9
- Anup Kumar7
- Marie Josse7
- Deepti Varshney6
- Simon Bray6
- Clea Siguret5
- Dave Clements5
- Florian Heyl5
- Hans-Rudolf Hotz5
- Maria Doyle5
- Mehmet Tekman5
- Nate Coraor5
- Yvan Le Bras5
- olisand5
- Anne Fouilloux4
- Ekaterina Polkh4
- Pavankumar Videm4
- Simon Gladman4
- Solenne Correard4
- Wandrille Duchemin4
- Andrea Bagnacani3
- Anika Erxleben3
- Bazante Sanders3
- Bert Droesbeke3
- Daniela Schneider3
- Engy Nasr3
- Keiler Collier3
- Lucille Delisle3
- Marisa Loach3
- Marius van den Beek3
- Miaomiao Zhou3
- Natalie Whitaker-Allen3
- Alexandre Cormier2
- Amirhossein Naghsh Nilchi2
- Anna Syme2
- Christine Oger2
- Clemens Blank2
- David López2
- Emma Leith2
- Igor Makunin2
- Joachim Wolff2
- Johan Gustafsson2
- Leily Rabbani2
- Linelle Abueg2
- Martin Carrere2
- Mateo Boudet2
- Mateusz Kuzak2
- Matthias Bernt2
- Michael Thang2
- Michele Maroni2
- Nadia Goué2
- Phil Reed2
- Pratik Jagtap2
- Praveen Kumar2
- Ray Sajulga2
- Subina Mehta2
- Swathi Nataraj2
- Verena Moosmann2
- pimarin2
- Alireza Khanteymoori1
- Anne Pajon1
- Beatriz Serrano-Solano1
- Christopher Barnett1
- Cyril Monjeaud1
- Delphine Lariviere1
- Diana Chiang Jurado1
- Fidel Ramirez1
- Giuseppe Defazio1
- Graeme Tyson1
- Jasper Ouwerkerk1
- Jennifer Hillman-Jackson1
- John Chilton1
- Julia Jakiela1
- Lisanna Paladin1
- Markus Wolfien1
- Matúš Kalaš1
- Melissa Burke1
- Natalie Kucher1
- Nils Mittler1
- Nuwan Goonasekera1
- Olha Nahorna1
- Pablo Moreno1
- Peter van Heusden1
- Polina Polunina1
- Show N_FILTERS more
- Resource type
- e-learning64
- slides21
- hands-on tutorial5
- Show N_FILTERS more
- Related resource
- Associated Training Datasets32
- Associated Workflows31
- Jupyter Notebook (with Solutions)5
- Jupyter Notebook (without Solutions)5
- Show N_FILTERS more
Show materials from all spaces
Show disabled materials
Show materials with broken links
Show archived materials

Training materials

Contributors: Bérénice Batut

and Authors: Bérénice Batut

90 materials found

Results per page:

1
2
3
4
5
6
7
8
9