Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • Spaces
  • Events
  • Materials
  • Workflows
  • Collections
  • e-Learning
  • Learning paths
  • Directory
    • Providers
    • Nodes

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Biological sequences6
    • Sequence analysis6
    • Sequence databases6
    • Community analysis4
    • Environmental microbiology4
    • Microbial ecology4
    • Microbiome4
    • Molecular community analysis4
    • Antimicrobial stewardship3
    • De novo genome sequencing3
    • Exomes3
    • Genome annotation3
    • Genome sequencing3
    • Genomes3
    • Genomics3
    • Medical microbiology3
    • Metagenomics3
    • Microbial genetics3
    • Microbial physiology3
    • Microbial surveillance3
    • Microbiological surveillance3
    • Microbiology3
    • Molecular infection biology3
    • Molecular microbiology3
    • Personal genomics3
    • Shotgun metagenomics3
    • Synthetic genomics3
    • Viral genomics3
    • WGS3
    • Whole genome resequencing3
    • Whole genome sequencing3
    • Whole genomes3
    • Algorithms2
    • Computer programming2
    • DNA variation2
    • Data structures2
    • Genetic variation2
    • Genomic variation2
    • Mutation2
    • Polymorphism2
    • Programming languages2
    • Software development2
    • Software engineering2
    • Somatic mutations2
    • Taxonomy2
    • Assembly1
    • Comparative transcriptomics1
    • Epidemiology1
    • Functional genomics1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Genetic linkage1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Mobile genetic elements1
    • Protein families1
    • Protein sequence classification1
    • Public health1
    • Public health and epidemiology1
    • Sequence assembly1
    • Synteny1
    • Transcriptome1
    • Transcriptomics1
    • Transposons1
    • Show N_FILTERS more
    • Tool
    • Galaxy14
    • Falco3
    • FastQC3
    • KrakenTools3
    • Bracken2
    • JBrowse2
    • SAMtools2
    • fastp2
    • kraken22
    • taxonomy_krona_chart2
    • BCFtools1
    • BLAST1
    • BWA1
    • Bakta1
    • BamTools1
    • Bandage1
    • Cutadapt1
    • FASTQE1
    • FreeBayes1
    • GEMINI1
    • ISEScan1
    • Integron Finder1
    • MetaPhlAn1
    • MultiQC1
    • NanoPlot1
    • Nextclade1
    • PlasmidFinder1
    • QUAST1
    • Recentrifuge1
    • SCANPY1
    • Trimmomatic1
    • bx-python1
    • pangolin1
    • pycoQC1
    • shovill1
    • tbl2gff31
    • Show N_FILTERS more
    • Content provider
    • GTN16
    • Show N_FILTERS more
    • Keyword
    • deutsch5
    • español5
    • italiano5
    • microgalaxy5
    • Microbiome3
    • Sequence Analysis3
    • illumina3
    • metagenomics3
    • Foundations of Data Science2
    • Variant Analysis2
    • bacteria2
    • 10x1
    • Assembly1
    • Choose your own Adventure1
    • CodeSpaces1
    • Command-line1
    • Contributing to the Galaxy Training Material1
    • Genome Annotation1
    • GitPod1
    • Introduction to Galaxy Analyses1
    • Single Cell1
    • Using Galaxy and Managing your Data1
    • assembly1
    • beer1
    • citizen science1
    • covid191
    • diversity1
    • gmod1
    • interactive-tools1
    • jbrowse11
    • nanopore1
    • one-health1
    • taxonomic profiling1
    • virology1
    • work-in-progress1
    • Show N_FILTERS more
    • Competency level
    • Beginner15
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International16
    • Show N_FILTERS more
    • Target audience
    • Students15
    • Instructors1
    • Show N_FILTERS more
    • Author
    • Bérénice Batut
    • Anup Kumar6
    • Anton Nekrutenko4
    • Björn Grüning4
    • Delphine Lariviere4
    • Saskia Hiltemann4
    • Helena Rasche3
    • Nicola Soranzo3
    • Paul Zierep3
    • Tristan Reynolds3
    • Alireza Khanteymoori2
    • Anna Syme2
    • Anne Fouilloux2
    • Anne Pajon2
    • Clemens Blank2
    • Cristóbal Gallardo2
    • David López2
    • Fotis E. Psomopoulos2
    • Lisanna Paladin2
    • Maria Doyle2
    • Marisa Loach2
    • Morgan Howells2
    • Simon Bray2
    • Sophia Hampe2
    • Stéphanie Robin2
    • Teresa Müller2
    • Wendi Bacon2
    • Wolfgang Maier2
    • Alex Ostrovsky1
    • Alexandre Cormier1
    • Anika Erxleben1
    • Anthony Bretaudeau1
    • Bazante Sanders1
    • Brandon Pickett1
    • Cameron Hyde1
    • Clea Siguret1
    • Daniel Blankenberg1
    • Daniela Schneider1
    • Dave Clements1
    • Deepti Varshney1
    • Diana Chiang Jurado1
    • Dilmurat Yusuf1
    • Elifsu Filiz1
    • Erwan Corre1
    • Fabian Recktenwald1
    • Gareth Price1
    • Hans-Rudolf Hotz1
    • Jeremy Goecks1
    • Joachim Wolff1
    • Jonathan Manning1
    • Junhao Qiu1
    • Kaivan Kamali1
    • Laura Leroi1
    • Linelle Abueg1
    • Marius van den Beek1
    • Mehmet Tekman1
    • Mirela Minkova1
    • Nikos Pechlivanis1
    • Paulo Cilas Morais Lyra Junior1
    • Pavankumar Videm1
    • Polina Polunina1
    • Sarah Peter1
    • Siyu Chen1
    • Toby Hodges1
    • Tom Brown1
    • Torsten Houwaart1
    • Vini Salazar1
    • Show N_FILTERS more
    • Contributor
    • Teresa Müller
    • Saskia Hiltemann93
    • Bérénice Batut90
    • Björn Grüning72
    • Helena Rasche69
    • Nicola Soranzo38
    • Cristóbal Gallardo29
    • Niall Beard26
    • Anthony Bretaudeau25
    • Martin Čech21
    • William Durand20
    • Gildas Le Corguillé15
    • Armin Dadras14
    • Paul Zierep13
    • Wendi Bacon13
    • Tristan Reynolds10
    • Wolfgang Maier9
    • Anup Kumar7
    • Marie Josse7
    • Deepti Varshney6
    • Simon Bray6
    • Clea Siguret5
    • Dave Clements5
    • Florian Heyl5
    • Hans-Rudolf Hotz5
    • Maria Doyle5
    • Mehmet Tekman5
    • Nate Coraor5
    • Yvan Le Bras5
    • olisand5
    • Anne Fouilloux4
    • Ekaterina Polkh4
    • Pavankumar Videm4
    • Simon Gladman4
    • Solenne Correard4
    • Wandrille Duchemin4
    • Andrea Bagnacani3
    • Anika Erxleben3
    • Bazante Sanders3
    • Bert Droesbeke3
    • Daniela Schneider3
    • Engy Nasr3
    • Keiler Collier3
    • Lucille Delisle3
    • Marisa Loach3
    • Marius van den Beek3
    • Miaomiao Zhou3
    • Natalie Whitaker-Allen3
    • Alexandre Cormier2
    • Amirhossein Naghsh Nilchi2
    • Anna Syme2
    • Christine Oger2
    • Clemens Blank2
    • David López2
    • Emma Leith2
    • Igor Makunin2
    • Joachim Wolff2
    • Johan Gustafsson2
    • Leily Rabbani2
    • Linelle Abueg2
    • Martin Carrere2
    • Mateo Boudet2
    • Mateusz Kuzak2
    • Matthias Bernt2
    • Michael Thang2
    • Michele Maroni2
    • Nadia Goué2
    • Phil Reed2
    • Pratik Jagtap2
    • Praveen Kumar2
    • Ray Sajulga2
    • Subina Mehta2
    • Swathi Nataraj2
    • Verena Moosmann2
    • pimarin2
    • Alireza Khanteymoori1
    • Anne Pajon1
    • Beatriz Serrano-Solano1
    • Christopher Barnett1
    • Cyril Monjeaud1
    • Delphine Lariviere1
    • Diana Chiang Jurado1
    • Fidel Ramirez1
    • Giuseppe Defazio1
    • Graeme Tyson1
    • Jasper Ouwerkerk1
    • Jennifer Hillman-Jackson1
    • John Chilton1
    • Julia Jakiela1
    • Lisanna Paladin1
    • Markus Wolfien1
    • Matúš Kalaš1
    • Melissa Burke1
    • Natalie Kucher1
    • Nils Mittler1
    • Nuwan Goonasekera1
    • Olha Nahorna1
    • Pablo Moreno1
    • Peter van Heusden1
    • Polina Polunina1
    • Show N_FILTERS more
    • Resource type
    • e-learning16
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets12
    • Associated Workflows11
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email
  • Harvest using OAI-PMH

Email Subscription

Harvest using OAI-PMH

Exchange content using OAI-PMH

Use an OAI-PMH compatible tool to harvest metadata using the OAI-PMH endpoint. In particular, this endpoint can be used for exchanging content between different TeSS instances. See the TeSS documentation for more details.

Contributors: Teresa Müller

and Authors: Bérénice Batut

16 materials found
  • ELIXIR TeSS

    e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • Beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
  • ELIXIR TeSS

    e-learning

    Clustering 3K PBMCs with Scanpy

    • Beginner
    Transcriptomics 10x Single Cell
  • ELIXIR TeSS

    e-learning

    RStudio in Galaxy

    • Beginner
    Using Galaxy and Managing your Data interactive-tools
  • ELIXIR TeSS

    e-learning

    From peaks to genes

    • Beginner
    Introduction to Galaxy Analyses deutsch español italiano
  • ELIXIR TeSS

    e-learning

    Mapping

    • Beginner
    Sequence analysis Mapping Sequence Analysis deutsch español italiano
  • ELIXIR TeSS

    e-learning

    Quality Control

    • Beginner
    Sequence analysis Sequence Analysis deutsch español italiano
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.