Training materials
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e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• IntermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
e-learning
Masking repeats with RepeatMasker
• BeginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
e-learning
Genome annotation with Funannotate
•• IntermediateGenomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1 -
e-learning
Genome assembly using PacBio data
•• IntermediateSequence assembly Genomics Biodiversity Assembly assembly biodiversity pacbio -
e-learning
RNA-Seq analysis with AskOmics Interactive Tool
• BeginnerTranscriptomics Transcriptomics -
e-learning
De novo transcriptome assembly, annotation, and differential expression analysis
• BeginnerTranscriptomics Transcriptomics -
e-learning
Galaxy Interactive Tools
• BeginnerGalaxy Server administration ansible interactive-tools -
slides
Refining Genome Annotations with Apollo
• BeginnerGenomics Genome Annotation prokaryote -
slides
Prerequisites for building software/conda packages
• BeginnerSoftware engineering Development in Galaxy -
slides
Tool Shed: sharing Galaxy tools
• BeginnerSoftware engineering Development in Galaxy