Training materials
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ELIXIR TeSS
e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• IntermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
ELIXIR TeSS
e-learning
Masking repeats with RepeatMasker
• BeginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
ELIXIR TeSS
e-learning
Genome annotation with Funannotate
•• IntermediateGenomics Gene and protein families Genome Annotation biodiversity eukaryote gmod jbrowse1 -
ELIXIR TeSS
e-learning
Genome assembly using PacBio data
•• IntermediateSequence assembly Genomics Biodiversity Assembly assembly biodiversity pacbio -
ELIXIR TeSS
e-learning
RNA-Seq analysis with AskOmics Interactive Tool
• BeginnerTranscriptomics Transcriptomics -
ELIXIR TeSS
e-learning
De novo transcriptome assembly, annotation, and differential expression analysis
• BeginnerTranscriptomics Transcriptomics -
ELIXIR TeSS
slides
Refining Genome Annotations with Apollo
• BeginnerGenomics Genome Annotation prokaryote -
ELIXIR TeSS
slides
Deeper look into Genome Assembly algorithms
•• IntermediateSequence assembly Assembly -
ELIXIR TeSS
slides
Integrate and query local datasets and distant RDF data with AskOmics using Semantic Web technologies
• BeginnerTranscriptomics Transcriptomics -
ELIXIR TeSS
slides
Options for using Galaxy
• BeginnerIntroduction to Galaxy Analyses