Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Community analysis4
    • Environmental microbiology4
    • Metagenomics4
    • Microbial ecology4
    • Microbiome4
    • Molecular community analysis4
    • Shotgun metagenomics4
    • Biological sequences3
    • Sequence analysis3
    • Sequence databases3
    • Taxonomy3
    • Function analysis2
    • Functional analysis2
    • Metatranscriptomics2
    • Protein function analysis2
    • Protein function prediction2
    • Assembly1
    • DNA variation1
    • Disease1
    • Epidemiology1
    • Genetic variation1
    • Genomic variation1
    • Mutation1
    • Pathology1
    • Polymorphism1
    • Public health1
    • Public health and epidemiology1
    • Sequence assembly1
    • Somatic mutations1
    • Show N_FILTERS more
    • Tool
    • MultiQC
    • Galaxy44
    • FastQC12
    • SAMtools7
    • taxonomy_krona_chart7
    • Cutadapt6
    • DeepTools5
    • BEDTools4
    • Bandage4
    • Falco4
    • KrakenTools4
    • MetaPhlAn4
    • NanoPlot4
    • BamTools3
    • Bracken3
    • JBrowse3
    • Newick Utilities3
    • QUAST3
    • fastp3
    • ggplot23
    • kraken23
    • mothur3
    • BCFtools2
    • Bakta2
    • Bowtie 22
    • FASTQE2
    • FastTree2
    • Flye2
    • GraPhlAn2
    • HUMAnN22
    • JBrowse 22
    • MACS2
    • Minimap22
    • Recentrifuge2
    • STAR2
    • SortMeRNA2
    • Trim Galore2
    • UCSC Genome Browser Utilities2
    • export2graphlan2
    • humann2
    • pycoQC2
    • seqtk2
    • tbl2gff32
    • ABRicate1
    • BLAST1
    • BWA1
    • Bowtie1
    • Bwa-mem21
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Combine Metaphlan and HUMAnN1
    • CoverM1
    • DESeq21
    • FeatureCounts1
    • Filtlong1
    • FreeBayes1
    • GEMINI1
    • GOseq1
    • ISEScan1
    • Integron Finder1
    • Krona1
    • MEGAHIT1
    • MEME1
    • MLST1
    • Medaka1
    • NCBI Datasets1
    • NGSUtils1
    • PPanGGOLiN1
    • Peakachu1
    • PlasmidFinder1
    • Polypolish1
    • R1
    • RCAS1
    • RSeQC1
    • SCANPY1
    • TRANSIT1
    • Trimmomatic1
    • UMI-tools1
    • bx-python1
    • dRep1
    • dada21
    • metaspades1
    • pathview1
    • phyloseq1
    • scikit-learn1
    • shovill1
    • staramr1
    • Show N_FILTERS more
    • Content provider
    • GTN5
    • Show N_FILTERS more
    • Keyword
    • Microbiome4
    • microgalaxy4
    • metatranscriptomics2
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Variant Analysis1
    • cyoa1
    • host-removal1
    • metagenomics1
    • preprocessing1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International5
    • Show N_FILTERS more
    • Target audience
    • Students5
    • Show N_FILTERS more
    • Author
    • Bérénice Batut
    • Pavankumar Videm4
    • Cristóbal Gallardo3
    • Maria Doyle3
    • Pratik Jagtap3
    • Saskia Hiltemann3
    • Subina Mehta3
    • Anton Nekrutenko2
    • Daniel Blankenberg2
    • Emma Leith2
    • Engy Nasr2
    • Paul Zierep2
    • Praveen Kumar2
    • Ray Sajulga2
    • Simon Gladman2
    • Wolfgang Maier2
    • Anika Erxleben1
    • Anna Delgado Tejedor1
    • Anna Syme1
    • Beatriz Serrano-Solano1
    • Belinda Phipson1
    • Björn Grüning1
    • Dave Clements1
    • David Salgado1
    • Fabian Andrade Lozano1
    • Florian Heyl1
    • Hans-Rudolf Hotz1
    • Harriet Dashnow1
    • Julia Ponomarenko1
    • Katarzyna Kamieniecka1
    • Kenji Fujihara1
    • Khaled Jum'ah1
    • Krzysztof Poterlowicz1
    • Luca Cozzuto1
    • Marius van den Beek1
    • Mehmet Tekman1
    • Mina Hojat Ansari1
    • Najat Amoukou1
    • Rand Zoabi1
    • Sarah Bonnin1
    • Sylvia Mahara1
    • Toni Hermoso Pulido1
    • Torsten Houwaart1
    • Twishi Gulati1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann5
    • Björn Grüning4
    • Bérénice Batut4
    • Helena Rasche4
    • Paul Zierep4
    • Christine Oger2
    • Engy Nasr2
    • Wolfgang Maier2
    • Armin Dadras1
    • Cristóbal Gallardo1
    • Deepti Varshney1
    • Ekaterina Polkh1
    • Gildas Le Corguillé1
    • Hans-Rudolf Hotz1
    • Martin Čech1
    • Natalie Whitaker-Allen1
    • Niall Beard1
    • Nicola Soranzo1
    • Teresa Müller1
    • Vini Salazar1
    • Show N_FILTERS more
    • Resource type
    • e-learning5
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets5
    • Associated Workflows5
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: MultiQC

and Competency level: Beginner

and Authors: Bérénice Batut

5 materials found
  • e-learning

    Remove contamination and host reads

    • Beginner
    Metagenomics Microbial ecology Microbiome host-removal metagenomics microgalaxy preprocessing
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • Beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data

    • Beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data (short)

    • Beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • e-learning

    Exome sequencing data analysis for diagnosing a genetic disease

    • Beginner
    Genetic variation Variant Analysis
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.