Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Comparative transcriptomics4
    • Transcriptome4
    • Transcriptomics4
    • Assembly2
    • Biological sequences2
    • Sequence analysis2
    • Sequence assembly2
    • Sequence databases2
    • Biodiversity1
    • Community analysis1
    • DNA metabarcoding1
    • Environmental metabarcoding1
    • Environmental microbiology1
    • Exomes1
    • Genome annotation1
    • Genomes1
    • Genomics1
    • Metabarcoding1
    • Metagenomics1
    • Microbial ecology1
    • Microbiome1
    • Molecular community analysis1
    • Personal genomics1
    • RNA metabarcoding1
    • Shotgun metagenomics1
    • Synthetic genomics1
    • Taxonomy1
    • Viral genomics1
    • Whole genomes1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • Galaxy9
    • MultiQC3
    • SAMtools3
    • fastp3
    • Biopython2
    • DESeq22
    • Falco2
    • Salmon2
    • Targetfinder.org2
    • Trim Galore2
    • miRDeep22
    • BUSCO1
    • BamTools1
    • Bandage1
    • Bwa-mem21
    • Diamond1
    • FastQC1
    • GenomeScope 2.01
    • IsoformSwitchAnalyzeR1
    • JBrowse1
    • Merqury1
    • Minimap21
    • NanoPlot1
    • PfamScan1
    • RSeQC1
    • SCANPY1
    • STAR1
    • Smudgeplots1
    • StringTie1
    • Unicycler1
    • bx-python1
    • gfastats1
    • gffcompare1
    • gffread1
    • kraken21
    • pyGenomeTracks1
    • rnaQUAST1
    • seqtk1
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • GTN9
    • Show N_FILTERS more
    • Keyword
    • plants4
    • Transcriptomics3
    • Assembly2
    • 10x1
    • 16S1
    • Introduction to Galaxy Analyses1
    • Microbiome1
    • QC1
    • Sequence analysis1
    • Single Cell1
    • animals1
    • assembly1
    • biodiversity1
    • covid191
    • genome1
    • metabarcoding1
    • miRNA1
    • microgalaxy1
    • nanopore1
    • paper-replication1
    • stress tolerance1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Intermediate2
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International9
    • Show N_FILTERS more
    • Target audience
    • Students9
    • Show N_FILTERS more
    • Author
    • Cristóbal Gallardo
    • Bérénice Batut36
    • Saskia Hiltemann18
    • Mehmet Tekman13
    • Yvan Le Bras13
    • Maria Doyle11
    • Pavankumar Videm11
    • Anton Nekrutenko10
    • Björn Grüning10
    • Marie Josse10
    • Subina Mehta10
    • Wendi Bacon10
    • Anne Fouilloux9
    • Anup Kumar9
    • Helena Rasche9
    • Simon Gladman9
    • Delphine Lariviere8
    • Kaivan Kamali8
    • Anthony Bretaudeau7
    • Julia Jakiela7
    • Nicola Soranzo7
    • Wolfgang Maier7
    • Anika Erxleben6
    • Anna Syme6
    • Dave Clements6
    • Paul Zierep6
    • Daniel Blankenberg5
    • Dechen Bhuming5
    • Erwan Corre5
    • Joachim Wolff5
    • Katherine Do5
    • Melanie Föll5
    • Pratik Jagtap5
    • Alexandre Cormier4
    • Alireza Khanteymoori4
    • Amirhossein Naghsh Nilchi4
    • Clemens Blank4
    • Coline Royaux4
    • Diana Chiang Jurado4
    • Florian Heyl4
    • Katarzyna Kamieniecka4
    • Krzysztof Poterlowicz4
    • Laura Leroi4
    • Lucille Delisle4
    • Mallory Freeberg4
    • Marisa Loach4
    • Stéphanie Robin4
    • Vivek Bhardwaj4
    • Alex Ostrovsky3
    • Bazante Sanders3
    • Beatriz Serrano-Solano3
    • Belinda Phipson3
    • Daniela Schneider3
    • Emma Leith3
    • Engy Nasr3
    • Fidel Ramirez3
    • Gildas Le Corguillé3
    • Guillaume Gricourt3
    • Ioana Popescu3
    • Jean-Loup Faulon3
    • Jeremy Goecks3
    • Joan Hérisson3
    • Junhao Qiu3
    • Kenza Bazi-Kabbaj3
    • Khaled Jum'ah3
    • Mo Heydarian3
    • Morgan Howells3
    • Paulo Cilas Morais Lyra Junior3
    • Polina Polunina3
    • Simon Bray3
    • Thomas Duigou3
    • Torsten Seemann3
    • Anne Pajon2
    • Chao Zhang2
    • David Christiany2
    • Ekaterina Polkh2
    • Elisa Michon2
    • Esteban Perez-Wohlfeil2
    • Florence Combes2
    • Florian Christoph Sigloch2
    • Friederike Dündar2
    • Hans-Rudolf Hotz2
    • Harriet Dashnow2
    • James Johnson2
    • Khai Van Dang2
    • Leily Rabbani2
    • Leonid Kostrykin2
    • Marius van den Beek2
    • Matthias Fahrner2
    • Miguel Roncoroni2
    • Nadia Goué2
    • Olivier Norvez2
    • Praveen Kumar2
    • Rand Zoabi2
    • Ray Sajulga2
    • Riccardo Massei2
    • Ryan Abernathey2
    • Simon Benateau2
    • Sophia Hampe2
    • Timothy J. Griffin2
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning8
    • Cristóbal Gallardo8
    • Helena Rasche7
    • Saskia Hiltemann6
    • Bérénice Batut5
    • Beatriz Serrano-Solano4
    • Deepti Varshney2
    • Nate Coraor2
    • Niall Beard2
    • Nicola Soranzo2
    • Pavankumar Videm2
    • Anthony Bretaudeau1
    • Anup Kumar1
    • Dave Clements1
    • Delphine Lariviere1
    • Gildas Le Corguillé1
    • Goodnews Sandy1
    • Lucille Delisle1
    • Maria Doyle1
    • Mehmet Tekman1
    • Peter van Heusden1
    • Saim Momin1
    • Sebastian Schaaf1
    • Teresa Müller1
    • Tom Brown1
    • Wendi Bacon1
    • Willem de Koning1
    • William Durand1
    • Wolfgang Maier1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning5
    • slides4
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows
    • Associated Training Datasets7
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Competency level: Beginner

and Authors: Cristóbal Gallardo

and Related resources: Associated Workflows

9 materials found
  • e-learning

    16S Microbial analysis with Nanopore data

    • Beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore …
  • e-learning

    ERGA post-assembly QC

    • Beginner
    Sequence assembly Genomics Biodiversity Assembly QC animals assembly biodiversity genome plants
  • slides

    Identification of non-canonical ORFs and their potential biological function

    • Beginner
    Transcriptomics Transcriptomics
  • slides

    Whole transcriptome analysis of Arabidopsis thaliana

    • Beginner
    Transcriptomics Transcriptomics
  • e-learning

    Whole transcriptome analysis of Arabidopsis thaliana

    • Beginner
    Transcriptomics Transcriptomics miRNA plants stress tolerance
  • e-learning

    Analysis of plant scRNA-Seq Data with Scanpy

    • Beginner
    Transcriptomics 10x Single Cell paper-replication plants
  • e-learning

    Introduction to Genomics and Galaxy

    • Beginner
    Introduction to Galaxy Analyses
  • slides

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    • Beginner
    Sequence assembly Assembly covid19
  • slides

    Mapping

    • Beginner
    Sequence analysis Sequence analysis
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.