Training materials
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e-learning
Decontamination of a genome assembly
• BeginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• BeginnerSequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity -
e-learning
ERGA post-assembly QC
• BeginnerSequence assembly Genomics Biodiversity Assembly QC animals assembly biodiversity genome plants -
e-learning
Essential genes detection with Transposon insertion sequencing
• BeginnerGenomics Microbiology Sequence analysis Mobile genetic elements Genome Annotation bacteria essential genes microgalaxy tnseq -
e-learning
Making sense of a newly assembled genome
• BeginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
e-learning
Unicycler Assembly
• BeginnerSequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote -
e-learning
Use Jupyter notebooks in Galaxy
• BeginnerUsing Galaxy and Managing your Data -
slides
Essential genes detection with Transposon insertion sequencing
• BeginnerGenomics Genome Annotation bacteria essential genes tnseq -
slides
Unicycler Assembly
• BeginnerSequence assembly Assembly prokaryote