Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Biological sequences3
    • Sequence analysis3
    • Sequence databases3
    • Community analysis2
    • Environmental microbiology2
    • Metagenomics2
    • Microbial ecology2
    • Microbiome2
    • Molecular community analysis2
    • Shotgun metagenomics2
    • Taxonomy2
    • Assembly1
    • Disease1
    • Epidemiology1
    • Function analysis1
    • Functional analysis1
    • Metatranscriptomics1
    • Pathology1
    • Protein function analysis1
    • Protein function prediction1
    • Public health1
    • Public health and epidemiology1
    • Sequence assembly1
    • Show N_FILTERS more
    • Tool
    • Galaxy
    • BamTools2
    • FastQC2
    • MultiQC2
    • SAMtools2
    • taxonomy_krona_chart2
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • Bandage1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Cutadapt1
    • FastTree1
    • Flye1
    • GraPhlAn1
    • HUMAnN21
    • JBrowse1
    • KrakenTools1
    • MLST1
    • Medaka1
    • MetaPhlAn1
    • Minimap21
    • NanoPlot1
    • Newick Utilities1
    • SortMeRNA1
    • export2graphlan1
    • fastp1
    • ggplot21
    • humann1
    • kraken21
    • Show N_FILTERS more
    • Content provider
    • GTN3
    • Show N_FILTERS more
    • Keyword
    • Microbiome2
    • microgalaxy2
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Sequence analysis1
    • cyoa1
    • metatranscriptomics1
    • Show N_FILTERS more
    • Competency level
    • Beginner
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Engy Nasr
    • Bérénice Batut44
    • Yvan Le Bras22
    • Saskia Hiltemann19
    • Subina Mehta17
    • Marie Josse14
    • Anne Fouilloux13
    • Mehmet Tekman13
    • Katherine Do12
    • Anton Nekrutenko11
    • Anup Kumar11
    • Helena Rasche11
    • Maria Doyle11
    • Pavankumar Videm11
    • Simon Gladman11
    • Björn Grüning10
    • Wendi Bacon10
    • Cristóbal Gallardo9
    • Delphine Lariviere9
    • James Johnson9
    • Kaivan Kamali8
    • Anthony Bretaudeau7
    • Julia Jakiela7
    • Nicola Soranzo7
    • Wolfgang Maier7
    • Anika Erxleben6
    • Anna Syme6
    • Coline Royaux6
    • Dave Clements6
    • Paul Zierep6
    • Valentin Loux6
    • Daniel Blankenberg5
    • Dechen Bhuming5
    • Diana Chiang Jurado5
    • Erwan Corre5
    • Joachim Wolff5
    • Melanie Föll5
    • Pratik Jagtap5
    • Alexandre Cormier4
    • Alireza Khanteymoori4
    • Amirhossein Naghsh Nilchi4
    • Beatriz Serrano-Solano4
    • Clemens Blank4
    • Florian Heyl4
    • Hélène Chiapello4
    • Katarzyna Kamieniecka4
    • Krzysztof Poterlowicz4
    • Laura Leroi4
    • Lucille Delisle4
    • Mallory Freeberg4
    • Stéphanie Robin4
    • Vivek Bhardwaj4
    • Alex Ostrovsky3
    • Bazante Sanders3
    • Belinda Phipson3
    • Daniela Schneider3
    • Emma Leith3
    • Fidel Ramirez3
    • Gildas Le Corguillé3
    • Jeremy Goecks3
    • Junhao Qiu3
    • Khaled Jum'ah3
    • Leonid Kostrykin3
    • Marisa Loach3
    • Mo Heydarian3
    • Morgan Howells3
    • Mélanie Petera3
    • Paulo Cilas Morais Lyra Junior3
    • Polina Polunina3
    • Simon Bray3
    • Torsten Seemann3
    • Anne Pajon2
    • Chao Zhang2
    • David Christiany2
    • Deepti Varshney2
    • Ekaterina Polkh2
    • Elisa Michon2
    • Esteban Perez-Wohlfeil2
    • Florence Combes2
    • Florian Christoph Sigloch2
    • Fotis E. Psomopoulos2
    • Friederike Dündar2
    • Hans-Rudolf Hotz2
    • Harriet Dashnow2
    • Helge Hecht2
    • Jean-François Martin2
    • Jon Trow2
    • Khai Van Dang2
    • Leily Rabbani2
    • Lisanna Paladin2
    • Marius van den Beek2
    • Matthias Fahrner2
    • Miguel Roncoroni2
    • Nadia Goué2
    • Olivier Norvez2
    • Pauline Seguineau2
    • Praveen Kumar2
    • Rand Zoabi2
    • Ray Sajulga2
    • Riccardo Massei2
    • Show N_FILTERS more
    • Contributor
    • Björn Grüning3
    • Bérénice Batut3
    • Helena Rasche3
    • Saskia Hiltemann3
    • Cristóbal Gallardo2
    • Paul Zierep2
    • Anthony Bretaudeau1
    • Anup Kumar1
    • Christine Oger1
    • Deepti Varshney1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Niall Beard1
    • Nicola Soranzo1
    • William Durand1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Resource type
    • e-learning2
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: Galaxy

and Competency level: Beginner

and Authors: Engy Nasr

3 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • Beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Metatranscriptomics analysis using microbiome RNA-seq data (short)

    • Beginner
    Metagenomics Microbial ecology Metatranscriptomics Taxonomy Function analysis Sequence analysis Microbiome metatranscriptomics microgalaxy
  • slides

    Mapping

    • Beginner
    Sequence analysis Sequence analysis
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.