Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Exomes3
    • Genome annotation3
    • Genomes3
    • Genomics3
    • Personal genomics3
    • Synthetic genomics3
    • Viral genomics3
    • Whole genomes3
    • Antimicrobial stewardship2
    • Assembly2
    • Biological sequences2
    • Medical microbiology2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • Sequence analysis2
    • Sequence assembly2
    • Sequence databases2
    • Comparative transcriptomics1
    • DNA variation1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Genetic linkage1
    • Genetic variation1
    • Genomic variation1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Mutation1
    • Polymorphism1
    • Protein families1
    • Protein sequence classification1
    • Somatic mutations1
    • Synteny1
    • Transcriptome1
    • Transcriptomics1
    • Show N_FILTERS more
    • Tool
    • Galaxy15
    • Galactic Circos4
    • JBrowse3
    • Apollo2
    • BEDTools2
    • Circos2
    • FastQC2
    • BCFtools1
    • BamTools1
    • Bandage1
    • Cutadapt1
    • DeepTools1
    • EGA1
    • FASTX-Toolkit1
    • FeatureCounts1
    • GEMINI1
    • GOseq1
    • HISAT21
    • MultiQC1
    • RSeQC1
    • SAMtools1
    • SPAdes1
    • SRA Software Toolkit1
    • VelvetOptimiser1
    • annotatemyids1
    • bx-python1
    • compute_sequence_length1
    • limma1
    • seqtk1
    • Show N_FILTERS more
    • Content provider
    • GTN15
    • Show N_FILTERS more
    • Keyword
    • Introduction to Galaxy Analyses3
    • Visualisation3
    • prokaryote3
    • Assembly2
    • Genome Annotation2
    • cyoa2
    • deutsch2
    • español2
    • gmod2
    • italiano2
    • jbrowse12
    • microgalaxy2
    • Contributing to the Galaxy Training Material1
    • Sequence analysis1
    • Transcriptomics1
    • Using Galaxy and Managing your Data1
    • Variant Analysis1
    • apollo21
    • biodiversity1
    • bulk1
    • rna-seq1
    • viz1
    • workflows1
    • Show N_FILTERS more
    • Competency level
    • Beginner9
    • Intermediate5
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International15
    • Show N_FILTERS more
    • Target audience
    • Students14
    • Instructors1
    • Show N_FILTERS more
    • Author
    • Helena Rasche
    • Bérénice Batut36
    • Saskia Hiltemann22
    • Subina Mehta16
    • Anthony Bretaudeau15
    • Björn Grüning15
    • Mehmet Tekman13
    • Yvan Le Bras13
    • Cristóbal Gallardo12
    • Anton Nekrutenko11
    • Maria Doyle11
    • Pavankumar Videm11
    • Pratik Jagtap11
    • Wolfgang Maier11
    • Anne Fouilloux10
    • Delphine Lariviere10
    • Marie Josse10
    • Melanie Föll10
    • Simon Bray10
    • Simon Gladman10
    • Wendi Bacon10
    • Anup Kumar9
    • Kaivan Kamali8
    • Timothy J. Griffin8
    • Anna Syme7
    • Daniel Blankenberg7
    • Diana Chiang Jurado7
    • Erwan Corre7
    • Julia Jakiela7
    • Matthias Fahrner7
    • Nicola Soranzo7
    • Paul Zierep7
    • Praveen Kumar7
    • Stéphanie Robin7
    • Alexandre Cormier6
    • Anika Erxleben6
    • Dave Clements6
    • Emma Leith6
    • Florian Christoph Sigloch6
    • Jeremy Goecks6
    • Junhao Qiu6
    • Laura Leroi6
    • Leonid Kostrykin6
    • Paulo Cilas Morais Lyra Junior6
    • Beatriz Serrano-Solano5
    • Dechen Bhuming5
    • James Johnson5
    • Joachim Wolff5
    • Katherine Do5
    • Lucille Delisle5
    • Ray Sajulga5
    • Riccardo Massei5
    • Alex Ostrovsky4
    • Alireza Khanteymoori4
    • Amirhossein Naghsh Nilchi4
    • Christopher Barnett4
    • Clemens Blank4
    • Coline Royaux4
    • Daniela Schneider4
    • Florian Heyl4
    • Katarzyna Kamieniecka4
    • Khai Van Dang4
    • Krzysztof Poterlowicz4
    • Mallory Freeberg4
    • Marius van den Beek4
    • Vivek Bhardwaj4
    • Bazante Sanders3
    • Belinda Phipson3
    • Engy Nasr3
    • Fidel Ramirez3
    • Gildas Le Corguillé3
    • Guillaume Gricourt3
    • Helge Hecht3
    • Ioana Popescu3
    • Jean-Loup Faulon3
    • Joan Hérisson3
    • Kenza Bazi-Kabbaj3
    • Khaled Jum'ah3
    • Marie Crane3
    • Marisa Loach3
    • Miguel Roncoroni3
    • Mo Heydarian3
    • Morgan Howells3
    • Nadia Goué3
    • Polina Polunina3
    • Romane LIBOUBAN3
    • Tharindu Senapathi3
    • Thomas Duigou3
    • Torsten Seemann3
    • Alyssa Pybus2
    • Anne Pajon2
    • Chao Zhang2
    • Christoph Stritt2
    • Daniela Brites2
    • David Christiany2
    • Ekaterina Polkh2
    • Elisa Michon2
    • Esteban Perez-Wohlfeil2
    • Florence Combes2
    • Friederike Dündar2
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann15
    • Björn Grüning14
    • Helena Rasche14
    • Bérénice Batut8
    • Anthony Bretaudeau7
    • Nicola Soranzo7
    • Niall Beard6
    • Maria Doyle5
    • Gildas Le Corguillé4
    • William Durand4
    • Cristóbal Gallardo3
    • David López3
    • Nate Coraor3
    • Teresa Müller3
    • Wolfgang Maier3
    • Anton Nekrutenko2
    • Armin Dadras2
    • Dave Clements2
    • Mehmet Tekman2
    • Simon Bray2
    • Simon Gladman2
    • Tristan Reynolds2
    • Wendi Bacon2
    • Beatriz Serrano-Solano1
    • Bert Droesbeke1
    • Clemens Blank1
    • Cyril Monjeaud1
    • Daniela Schneider1
    • Deepti Varshney1
    • Ekaterina Polkh1
    • Florian Heyl1
    • Hans-Rudolf Hotz1
    • Jasper Ouwerkerk1
    • José Manuel Domínguez1
    • Linelle Abueg1
    • Lucille Delisle1
    • Marius van den Beek1
    • Martin Čech1
    • Matthias Bernt1
    • Matti Hoch1
    • Mira Kuntz1
    • Renato Alves1
    • Sanjay Kumar Srikakulam1
    • Stéphanie Robin1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning12
    • slides3
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows
    • Jupyter Notebook (with Solutions)24
    • Jupyter Notebook (without Solutions)24
    • Associated Training Datasets19
    • Quarto/RMarkdown Notebook3
    • Show N_FILTERS more
    • Collection
    • ELIXIR Federated Human Data Community1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Authors: Helena Rasche

and Related resources: Associated Workflows

15 materials found
  • e-learning

    Pathway analysis with the MINERVA Platform

    •• Intermediate
    Transcriptomics Transcriptomics bulk cyoa rna-seq viz
  • e-learning

    Ploting a Microbial Genome with Circos

    •• Intermediate
    Visualisation
  • e-learning

    Trio Analysis using Synthetic Datasets from RD-Connect GPAP

    ••• Advanced
    Genetic variation Variant Analysis cyoa
  • e-learning

    Visualisation with Circos

    •• Intermediate
    Visualisation
  • e-learning

    Refining Genome Annotations with Apollo (prokaryotes)

    •• Intermediate
    Genomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy …
  • e-learning

    Making sense of a newly assembled genome

    • Beginner
    Sequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote
  • e-learning

    De Bruijn Graph Assembly

    • Beginner
    Sequence assembly Assembly
  • e-learning

    Creating a new tutorial

    • Beginner
    Contributing to the Galaxy Training Material
  • e-learning

    Using Workflow Parameters

    •• Intermediate
    Using Galaxy and Managing your Data workflows
  • e-learning

    Galaxy Basics for genomics

    • Beginner
    Introduction to Galaxy Analyses
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.