Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Assembly9
    • Sequence assembly9
    • Exomes5
    • Genome annotation5
    • Genomes5
    • Genomics5
    • Personal genomics5
    • Synthetic genomics5
    • Viral genomics5
    • Whole genomes5
    • Antimicrobial stewardship4
    • Medical microbiology4
    • Microbial genetics4
    • Microbial physiology4
    • Microbial surveillance4
    • Microbiological surveillance4
    • Microbiology4
    • Molecular infection biology4
    • Molecular microbiology4
    • Biological sequences2
    • DNA variation2
    • Genetic variation2
    • Genomic variation2
    • Mutation2
    • Polymorphism2
    • Sequence analysis2
    • Sequence databases2
    • Somatic mutations2
    • Communicable disease1
    • DNA polymorphism1
    • Epidemiology1
    • Gene and protein families1
    • Gene families1
    • Gene family1
    • Gene system1
    • Genes, gene family or system1
    • Infectious disease1
    • Microsatellites1
    • Protein families1
    • Protein sequence classification1
    • Public health1
    • Public health and epidemiology1
    • RFLP1
    • SNP1
    • Single nucleotide polymorphism1
    • Transmissible disease1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • snps1
    • Show N_FILTERS more
    • Tool
    • Galaxy10
    • FastQC3
    • JBrowse3
    • Bandage2
    • MultiQC2
    • QUAST2
    • SPAdes2
    • Unicycler2
    • VelvetOptimiser2
    • snippy2
    • BCFtools1
    • COMBAT-TB Workbench1
    • Jvarkit1
    • QualiMap1
    • Show N_FILTERS more
    • Content provider
    • GTN13
    • Show N_FILTERS more
    • Keyword
    • Assembly7
    • prokaryote6
    • microgalaxy4
    • Genome Annotation2
    • Variant Analysis2
    • gmod2
    • jbrowse12
    • Using Galaxy and Managing your Data1
    • admin1
    • biodiversity1
    • one-health1
    • tuberculosis1
    • Show N_FILTERS more
    • Competency level
    • Beginner10
    • Intermediate2
    • Not specified1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International13
    • Show N_FILTERS more
    • Target audience
    • Students
    • Galaxy Administrators20
    • Show N_FILTERS more
    • Author
    • Simon Gladman
    • Bérénice Batut73
    • Helena Rasche60
    • Saskia Hiltemann41
    • Anton Nekrutenko28
    • Yvan Le Bras27
    • Subina Mehta26
    • Anthony Bretaudeau23
    • The Carpentries22
    • Anne Fouilloux21
    • Björn Grüning19
    • Bazante Sanders18
    • Katarzyna Kamieniecka18
    • Krzysztof Poterlowicz18
    • Mehmet Tekman17
    • Marie Josse15
    • Nicola Soranzo15
    • Cristóbal Gallardo14
    • Pratik Jagtap14
    • Wendi Bacon14
    • Dave Clements13
    • Delphine Lariviere13
    • Donny Vrins13
    • Julia Jakiela13
    • Maria Doyle13
    • Wolfgang Maier13
    • Anup Kumar12
    • James Johnson12
    • Katherine Do12
    • Melanie Föll12
    • Khaled Jum'ah11
    • Paul Zierep11
    • Pavankumar Videm11
    • Simon Bray11
    • Fotis E. Psomopoulos10
    • Anika Erxleben9
    • Praveen Kumar9
    • Anne Pajon8
    • Avans Hogeschool8
    • Diana Chiang Jurado8
    • Emma Leith8
    • Joachim Wolff8
    • Kaivan Kamali8
    • Stéphanie Robin8
    • Timothy J. Griffin8
    • Alexandre Cormier7
    • Anna Syme7
    • Christopher Barnett7
    • Daniel Blankenberg7
    • Erwan Corre7
    • Florian Christoph Sigloch7
    • Laura Cooper7
    • Laura Leroi7
    • Leonid Kostrykin7
    • Matthias Fahrner7
    • Michael Charleston7
    • Nadia Goué7
    • Ray Sajulga7
    • Robert Andrews7
    • Alex Ostrovsky6
    • Andrew Mason6
    • Beatriz Serrano-Solano6
    • Branka Franicevic6
    • Coline Royaux6
    • Gildas Le Corguillé6
    • Jeremy Goecks6
    • Junhao Qiu6
    • Marius van den Beek6
    • Morgan Howells6
    • Paulo Cilas Morais Lyra Junior6
    • Philippe Rocca-Serra6
    • Sara Morsy6
    • Valentin Loux6
    • Xenia Perez Sitja6
    • Dechen Bhuming5
    • Diana Pilvar5
    • Kellie Snow5
    • Korneel Hens5
    • Munazah Andrabi5
    • Nick Juty5
    • Polina Polunina5
    • Raphael Mourad5
    • Riccardo Massei5
    • Saskia Lawson-Tovey5
    • Alireza Khanteymoori4
    • Amirhossein Naghsh Nilchi4
    • Andrea Bagnacani4
    • Clemens Blank4
    • Daniela Schneider4
    • Engy Nasr4
    • Florian Heyl4
    • Guillaume Gricourt4
    • Helge Hecht4
    • Hélène Chiapello4
    • Ioana Popescu4
    • Jean-Loup Faulon4
    • Joan Hérisson4
    • Kenza Bazi-Kabbaj4
    • Khai Van Dang4
    • Lucille Delisle4
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche13
    • Saskia Hiltemann12
    • Björn Grüning10
    • Bérénice Batut10
    • Niall Beard9
    • Nicola Soranzo9
    • Cristóbal Gallardo5
    • Simon Gladman5
    • William Durand5
    • Anthony Bretaudeau4
    • Maria Doyle4
    • Anna Syme3
    • Anton Nekrutenko2
    • Delphine Lariviere2
    • Gildas Le Corguillé2
    • Peter van Heusden2
    • Tristan Reynolds2
    • Anne Fouilloux1
    • Enis Afgan1
    • Jennifer Hillman-Jackson1
    • Linelle Abueg1
    • Mélanie Petera1
    • Nate Coraor1
    • Wolfgang Maier1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning7
    • slides6
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets10
    • Associated Workflows10
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Target audience: Students

and Authors: Simon Gladman

13 materials found
  • e-learning

    M. tuberculosis Variant Analysis

    •• Intermediate
    Genetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote …
  • e-learning

    Microbial Variant Calling

    • Beginner
    Genetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis gmod jbrowse1 microgalaxy …
  • e-learning

    Genome annotation with Prokka

    • Beginner
    Genomics Microbiology Gene and protein families Sequence analysis Genome Annotation gmod jbrowse1 microgalaxy prokaryote
  • e-learning

    Unicycler Assembly

    • Beginner
    Sequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote
  • e-learning

    An Introduction to Genome Assembly

    • Beginner
    Sequence assembly Assembly
  • e-learning

    De Bruijn Graph Assembly

    • Beginner
    Sequence assembly Assembly
  • e-learning

    Downloading and Deleting Data in Galaxy

    • Beginner
    Using Galaxy and Managing your Data
  • slides

    Genome annotation with Prokka

    • Beginner
    Genomics Genome Annotation prokaryote
  • slides

    Deeper look into Genome Assembly algorithms

    •• Intermediate
    Sequence assembly Assembly
  • slides

    Unicycler Assembly

    • Beginner
    Sequence assembly Assembly prokaryote
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.