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Competency level: Beginner

and Authors: Wendi Bacon

and Contributors: Pablo Moreno

7 materials found
  • e-learning

    Converting between common single cell data formats

    • Beginner
    Single Cell data import data management sc_formats
  • e-learning

    Importing files from public atlases

    • Beginner
    Single Cell data import data management sc_formats
  • e-learning

    Generating a single cell matrix using Alevin and combining datasets (bash + R)

    • Beginner
    10x MIGHTS Single Cell jupyter-notebook paper-replication
  • e-learning

    Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution

    • Beginner
    Single Cell data management deconvolution transcriptomics
  • e-learning

    Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution

    • Beginner
    Single Cell data management deconvolution
  • e-learning

    Combining single cell datasets after pre-processing

    • Beginner
    Transcriptomics MIGHTS Single Cell paper-replication
  • e-learning

    Filter, plot and explore single-cell RNA-seq data with Scanpy

    • Beginner
    Transcriptomics MIGHTS Single Cell paper-replication
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TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.