Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • DNA variation5
    • Genetic variation5
    • Genomic variation5
    • Mutation5
    • Polymorphism5
    • Somatic mutations5
    • Assembly1
    • Biological sequences1
    • Comparative transcriptomics1
    • Sequence analysis1
    • Sequence assembly1
    • Sequence databases1
    • Transcriptome1
    • Transcriptomics1
    • Show N_FILTERS more
    • Tool
    • SAMtools
    • Galaxy13
    • BWA6
    • Falco4
    • Trimmomatic4
    • BCFtools3
    • FreeBayes3
    • GEMINI3
    • MAFFT3
    • fastp3
    • seqtk3
    • FastQC2
    • MultiQC2
    • QualiMap2
    • compute_sequence_length2
    • iVar2
    • BLAST1
    • BamTools1
    • EGA1
    • FREEC1
    • Galactic Circos1
    • NanoPlot1
    • Nextclade1
    • STAR1
    • UCSC Genome Browser Utilities1
    • Unicycler1
    • VAPOR1
    • VarScan1
    • iqtree1
    • pangolin1
    • varVAMP1
    • Show N_FILTERS more
    • Content provider
    • GTN8
    • Show N_FILTERS more
    • Keyword
    • Variant Analysis5
    • covid192
    • one-health2
    • virology2
    • Assembly1
    • Sequence analysis1
    • Single Cell1
    • biodiversity1
    • work-in-progress1
    • Show N_FILTERS more
    • Competency level
    • Beginner4
    • Intermediate3
    • Advanced1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International8
    • Show N_FILTERS more
    • Target audience
    • Students8
    • Show N_FILTERS more
    • Author
    • Wolfgang Maier
    • Bérénice Batut7
    • Anika Erxleben5
    • Cristóbal Gallardo3
    • Joachim Wolff3
    • Vivek Bhardwaj3
    • Anton Nekrutenko2
    • Daniel Blankenberg2
    • Dave Clements2
    • Engy Nasr2
    • Fidel Ramirez2
    • Florian Heyl2
    • Friederike Dündar2
    • Leily Rabbani2
    • Lucille Delisle2
    • Mallory Freeberg2
    • Maria Doyle2
    • Marius van den Beek2
    • Mehmet Tekman2
    • Pavankumar Videm2
    • Alex Ostrovsky1
    • Anna Delgado Tejedor1
    • Belinda Phipson1
    • Björn Grüning1
    • Christoph Stritt1
    • Daniela Brites1
    • David Salgado1
    • Delphine Lariviere1
    • Fabian Andrade Lozano1
    • Fabian Recktenwald1
    • Galo A. Goig1
    • Harriet Dashnow1
    • Helena Rasche1
    • Julia Ponomarenko1
    • Katarzyna Kamieniecka1
    • Khaled Jum'ah1
    • Krzysztof Poterlowicz1
    • Luca Cozzuto1
    • Mo Heydarian1
    • Paul Zierep1
    • Sarah Bonnin1
    • Saskia Hiltemann1
    • Tom Brown1
    • Tomas Klingström1
    • Toni Hermoso Pulido1
    • Torsten Houwaart1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann8
    • Helena Rasche7
    • Wolfgang Maier7
    • Björn Grüning6
    • Bérénice Batut5
    • Simon Gladman3
    • Anton Nekrutenko2
    • Armin Dadras2
    • Gildas Le Corguillé2
    • Martin Čech2
    • Nicola Soranzo2
    • Verena Moosmann2
    • Anthony Bretaudeau1
    • Ekaterina Polkh1
    • Katarzyna Kamieniecka1
    • Khaled Jum'ah1
    • Mehmet Tekman1
    • Niall Beard1
    • Simon Bray1
    • Stéphanie Robin1
    • Teresa Müller1
    • Wendi Bacon1
    • Show N_FILTERS more
    • Resource type
    • e-learning8
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows7
    • Associated Training Datasets5
    • Show N_FILTERS more
    • Collection
    • ELIXIR hCNV community - collection of courses and materials.1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: SAMtools

and Authors: Wolfgang Maier

8 materials found
  • e-learning

    Pox virus genome analysis from tiled-amplicon sequencing data

    ••• Advanced
    Genetic variation Variant Analysis one-health virology
  • e-learning

    Avian influenza viral strain analysis from gene segment sequencing data

    •• Intermediate
    Genetic variation Variant Analysis one-health virology
  • e-learning

    Somatic Variant Discovery from WES Data Using Control-FREEC

    • Beginner
    Genetic variation Variant Analysis
  • e-learning

    Exome sequencing data analysis for diagnosing a genetic disease

    • Beginner
    Genetic variation Variant Analysis
  • e-learning

    Identification of somatic and germline variants from tumor and normal sample pairs

    • Beginner
    Genetic variation Variant Analysis
  • e-learning

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    •• Intermediate
    Sequence assembly Assembly biodiversity covid19
  • e-learning

    Pre-processing of Single-Cell RNA Data

    • Beginner
    Transcriptomics Single Cell work-in-progress
  • e-learning

    Removal of human reads from SARS-CoV-2 sequencing data

    •• Intermediate
    Sequence analysis Sequence analysis covid19
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.